View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0831_low_6 (Length: 546)
Name: NF0831_low_6
Description: NF0831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0831_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-138; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 30 - 411
Target Start/End: Complemental strand, 33309140 - 33308746
Alignment:
| Q |
30 |
aaccgttgaaggaactcgatattcaatttacattagtgtcatggtttaaacctccaaaatcatagcatcttggattcctaagagagttatcatcaacatt |
129 |
Q |
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| T |
33309140 |
aaccgctgaaggaactcgatatccaatttacattggtgtcatggtttaaaccttcaaaatcatagcgtcttggattactaagagagttaccatcaacatt |
33309041 |
T |
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| Q |
130 |
taatttaattgtttccttgatggaggttttcaaacaaccaagtgaggttccatgtatgtaatatcggaatccgagctcctaatagttgcttc----ataa |
225 |
Q |
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| T |
33309040 |
taatttaattgtttccttggtggaggttttcaaacaaccaagcgaggttccctgtatgtaatatcggaatccgagctcttaatagttgtttcatatataa |
33308941 |
T |
|
| Q |
226 |
tgtgtaataattag---------ttcctagtctcctcatgtagtgttagaaaaagctcttcgttacgagctttcgaaatgaaccaacaagcaatcaaaaa |
316 |
Q |
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| T |
33308940 |
tgtgtaataattagattgaaaacttcctagtctccccatgtagtgttagaaaaaactcttcgttacaaactttcgatatgaaccaacaagcaatcaaaaa |
33308841 |
T |
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| Q |
317 |
gagttgtccatcttgctcggaagcaaattgattaattgaattataacatttagacatcataaagatttaagaattatgaaaatacaacgtattcc |
411 |
Q |
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| T |
33308840 |
tagttgttcatcttgctcggaagcaaaatgattaatcgaatcataacatttaaacatcgtaaagatttaagaattatgaaaatacaacgtattcc |
33308746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 476
Target Start/End: Complemental strand, 33308730 - 33308683
Alignment:
| Q |
429 |
tggctttcggacaatccctcgtagtgtgcatagttttcttttctgtcg |
476 |
Q |
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|||||||||||||||||||| || ||||||||||||||| ||| |||| |
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| T |
33308730 |
tggctttcggacaatccctcataatgtgcatagttttctcttcagtcg |
33308683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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