View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0831_low_63 (Length: 283)
Name: NF0831_low_63
Description: NF0831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0831_low_63 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 101; Significance: 4e-50; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 8356103 - 8356207
Alignment:
| Q |
1 |
ttgtttaatctcaaatttatcatcatcaccctatataagttctcaacccccaacatagaagaaaacagtatactagtgaacaaggctggaggacccgtac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
8356103 |
ttgtttaatctcaaatttatcatcatcaccctatataagttctcaacccccaacatagaagaaaacagtatactagtgaacaaggctggaggaaccgtac |
8356202 |
T |
|
| Q |
101 |
aatca |
105 |
Q |
| |
|
||||| |
|
|
| T |
8356203 |
aatca |
8356207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 145
Target Start/End: Original strand, 8356335 - 8356373
Alignment:
| Q |
107 |
ctcaacagctataagtaatgtaacagtgaatgatgttat |
145 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
8356335 |
ctcaacagctataagtaatgtaacaatgaatgatgttat |
8356373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 8433167 - 8433227
Alignment:
| Q |
77 |
tgaacaaggctggaggacccgtacaatcagctcaacagctataagtaatgtaacagtgaatga |
139 |
Q |
| |
|
||||||| |||||||||||| |||||||| ||||||||| |||| ||||||||| ||||||| |
|
|
| T |
8433167 |
tgaacaaagctggaggacccttacaatcaactcaacagc--taagcaatgtaacaatgaatga |
8433227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1019 times since January 2019
Visitors: 6135