View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0831_low_64 (Length: 281)

Name: NF0831_low_64
Description: NF0831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0831_low_64
NF0831_low_64
[»] chr5 (8 HSPs)
chr5 (1-273)||(34232720-34232992)
chr5 (1-221)||(34240463-34240680)
chr5 (4-219)||(42128843-42129055)
chr5 (1-207)||(42123470-42123673)
chr5 (1-171)||(42117767-42117937)
chr5 (73-216)||(41713547-41713691)
chr5 (24-140)||(41571960-41572076)
chr5 (24-140)||(41617599-41617715)
[»] chr4 (1 HSPs)
chr4 (3-219)||(11118103-11118316)
[»] chr2 (3 HSPs)
chr2 (1-207)||(12248432-12248635)
chr2 (1-207)||(11994294-11994497)
chr2 (38-162)||(32681868-32681992)
[»] chr6 (2 HSPs)
chr6 (1-223)||(24140786-24141004)
chr6 (1-223)||(25522949-25523168)
[»] chr3 (1 HSPs)
chr3 (3-205)||(8523080-8523279)


Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 34232720 - 34232992
Alignment:
Q  1 aaaatagaagacaaatttcctgactggattcaaactctgcaagatttgaaagtgctagttttacgagataataagttgcatggtcacattgccaatttaa 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34232720 aaaatagaagacaaatttcctgactggattcaaactttgcaagatttgaaagtgctagttttacgagataataagttgcatggtcacattgccaatttaa 34232819  T
Q  101 agatcaagaatccatttcccagtttagttatttttgatatctcgggaaataactttagtggtccgctaccaccgaaagactatttcaaaaagtatgaagc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34232820 agatcaagaatccatttcccagtttagttatttttgatatctcgggaaataactttagtggtccgctaccaccgaaagactatttcaaaaagtatgaagc 34232919  T
Q  201 catgaaggctgttactcaagtgggagagaataccagtttgctatatgtacaagattcagcagggtcctatgat 273  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34232920 catgaaggctgttactcaagtgggagagaataccagtttgctatatgtacaagattcagcagggtcctatgat 34232992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 34240463 - 34240680
Alignment:
Q  1 aaaatagaagacaaatttcctgactggattcaaactctgcaagatttgaaagtgctagttttacgagataataagttgcatggtcacattgccaatttaa 100  Q
    ||||| |||||||||||||||| |||| |||||||||| ||| | ||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||    
T  34240463 aaaatggaagacaaatttcctgtctggcttcaaactctccaatacttgaaagtgctggttttgcgagacaataagttgcatggtcacattgccaatttaa 34240562  T
Q  101 agatcaagaatccatttcccagtttagttatttttgatatctcgggaaataactttagtggtccgctaccaccgaaagactatttcaaaaagtatgaagc 200  Q
    |||||| | |||||||||| |||||||||||||||||||||||  | |||||||||| |||||||||||||   |||| |||||| ||| | | ||||||    
T  34240563 agatcaggcatccatttcctagtttagttatttttgatatctcaagcaataactttactggtccgctacca---aaagcctatttaaaatattttgaagc 34240659  T
Q  201 catgaaggctgttactcaagt 221  Q
    |||||||   |||||||||||    
T  34240660 catgaagaaagttactcaagt 34240680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 4 - 219
Target Start/End: Complemental strand, 42129055 - 42128843
Alignment:
Q  4 atagaagacaaatttcctgactggattcaaactctgcaagatttgaaagtgctagttttacgagataataagttgcatggtcacattgccaatttaaaga 103  Q
    ||||||||||| |||||||| ||| ||||||| |||||| ||||||||||| | ||||| | ||| || ||||||||||||  |||||| ||| ||||||    
T  42129055 atagaagacaattttcctgattggcttcaaacactgcaatatttgaaagtgttggttttgcaagacaacaagttgcatggtatcattgctaatctaaaga 42128956  T
Q  104 tcaagaatccatttcccagtttagttatttttgatatctcgggaaataactttagtggtccgctaccaccgaaagactatttcaaaaagtatgaagccat 203  Q
    ||||| |||||||||| |||||| |||||||||||||||| || ||||||||||| ||||||||||||   |||| |||||| ||||||| |||||||||    
T  42128955 tcaagcatccatttccaagtttaattatttttgatatctcaggcaataactttagcggtccgctacca---aaagcctattttaaaaagtttgaagccat 42128859  T
Q  204 gaaggctgttactcaa 219  Q
    ||||  ||||||||||    
T  42128858 gaagaatgttactcaa 42128843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 42123673 - 42123470
Alignment:
Q  1 aaaatagaagacaaatttcctgactggattcaaactctgcaagatttgaaagtgctagttttacgagataataagttgcatggtcacattgccaatttaa 100  Q
    |||||||||||||| |||||||| ||| ||||||| || |||||||||||||| || ||||| ||||| |||||||| ||||||| ||| ||||||||||    
T  42123673 aaaatagaagacaattttcctgattggtttcaaacacttcaagatttgaaagtactggttttgcgagacaataagtttcatggtcccatcgccaatttaa 42123574  T
Q  101 agatcaagaatccatttcccagtttagttatttttgatatctcgggaaataactttagtggtccgctaccaccgaaagactatttcaaaaagtatgaagc 200  Q
    ||||  ||  || |||||| || ||| | |||||||||||||| |||||||||||| |||||   ||||||   |||| |||||  ||||| ||||||||    
T  42123573 agattgagcgtctatttccaagcttaatcatttttgatatctctggaaataactttggtggttttctacca---aaagcctattcaaaaaattatgaagc 42123477  T
Q  201 catgaag 207  Q
    |||||||    
T  42123476 catgaag 42123470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 42117937 - 42117767
Alignment:
Q  1 aaaatagaagacaaatttcctgactggattcaaactctgcaagatttgaaagtgctagttttacgagataataagttgcatggtcacattgccaatttaa 100  Q
    |||||| |||| | |||||| | |||| ||||||| || ||| ||||| ||||| | ||||||| ||| |||||||||||||||  |||| | |||  ||    
T  42117937 aaaataaaagaaagatttcccgtctggcttcaaacactacaatatttgcaagtgttggttttacaagacaataagttgcatggtatcattcctaatccaa 42117838  T
Q  101 agatcaagaatccatttcccagtttagttatttttgatatctcgggaaataactttagtggtccgctacca 171  Q
    |||||||| |||||||||| |||||| |||||||| ||||||| ||||||||||||||  |||||||||||    
T  42117837 agatcaagcatccatttccaagtttaattattttttatatctcaggaaataactttagctgtccgctacca 42117767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 73 - 216
Target Start/End: Original strand, 41713547 - 41713691
Alignment:
Q  73 aagttgcatggtcacattgccaatttaaagatcaagaatccatttcccagttt----agttatttttgatatctcgggaaataactttagtggtccgcta 168  Q
    |||||||||||||  ||| ||||||||||||||||  ||||||||||||||||    | | ||| ||||||||||||| ||| |||| ||||||||||||    
T  41713547 aagttgcatggtcctatttccaatttaaagatcaaacatccatttcccagtttattaattaattgttgatatctcgggcaatgacttcagtggtccgcta 41713646  T
Q  169 ccaccgaaagactatttcaaaaagtatgaagccatgaaggctgttact 216  Q
    |||   |||| |||||| ||||| ||| || ||||||||  |||||||    
T  41713647 cca---aaagcctatttaaaaaattatcaaaccatgaagaatgttact 41713691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 140
Target Start/End: Original strand, 41571960 - 41572076
Alignment:
Q  24 ctggattcaaactctgcaagatttgaaagtgctagttttacgagataataagttgcatggtcacattgccaatttaaagatcaagaatccatttcccagt 123  Q
    |||| |||||||| ||||| ||||| |||| || ||||| ||||| ||||| ||| ||||||  ||||||  | |||| |||||| |||||||||| |||    
T  41571960 ctggcttcaaactatgcaatatttggaagtactggttttgcgagagaataatttgtatggtcctattgccggtgtaaatatcaagcatccatttcctagt 41572059  T
Q  124 ttagttatttttgatat 140  Q
    ||| |||||||||||||    
T  41572060 ttaattatttttgatat 41572076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 140
Target Start/End: Original strand, 41617599 - 41617715
Alignment:
Q  24 ctggattcaaactctgcaagatttgaaagtgctagttttacgagataataagttgcatggtcacattgccaatttaaagatcaagaatccatttcccagt 123  Q
    |||| |||||||| ||||| ||||| |||| || ||||| ||||| ||||| ||| ||||||  ||||||  | |||| |||||| |||||||||| |||    
T  41617599 ctggcttcaaactatgcaatatttggaagtactggttttgcgagagaataatttgtatggtcctattgccggtgtaaatatcaagcatccatttcctagt 41617698  T
Q  124 ttagttatttttgatat 140  Q
    ||| |||||||||||||    
T  41617699 ttaattatttttgatat 41617715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 3 - 219
Target Start/End: Complemental strand, 11118316 - 11118103
Alignment:
Q  3 aatagaagacaaatttcctgactggattcaaactctgcaagatttgaaagtgctagttttacgagataataagttgcatggtcacattgccaatttaaag 102  Q
    |||||||||||  |||||||| ||| |||||||  ||| ||||||||||||  | ||||| ||||| |||||||||||||||| |||||  |||||||||    
T  11118316 aatagaagacagttttcctgattggcttcaaacattgccagatttgaaagtattggttttgcgagacaataagttgcatggtcccattgaaaatttaaag 11118217  T
Q  103 atcaagaatccatttcccagtttagttatttttgatatctcgggaaataactttagtggtccgctaccaccgaaagactatttcaaaaagtatgaagcca 202  Q
    ||| || ||| |||||| || ||| | ||||||||||||||||| || | ||||||||||   ||||||   |||| |||||| ||||| |||||||| |    
T  11118216 atcgagcatctatttccaagcttaatcatttttgatatctcgggcaacagctttagtggttttctacca---aaagcctatttaaaaaactatgaagcta 11118120  T
Q  203 tgaaggctgttactcaa 219  Q
    |||||  ||||||||||    
T  11118119 tgaagaatgttactcaa 11118103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 12248635 - 12248432
Alignment:
Q  1 aaaatagaagacaaatttcctgactggattcaaactctgcaagatttgaaagtgctagttttacgagataataagttgcatggtcacattgccaatttaa 100  Q
    |||||||||||| | |||||||| ||| ||||||| |||||||||||||||||  |  |  | ||||| |||||||||||||||  |||||  ||| |||    
T  12248635 aaaatagaagacgagtttcctgattggcttcaaacactgcaagatttgaaagttttgctgctgcgagacaataagttgcatggtatcattgttaatctaa 12248536  T
Q  101 agatcaagaatccatttcccagtttagttatttttgatatctcgggaaataactttagtggtccgctaccaccgaaagactatttcaaaaagtatgaagc 200  Q
    | |  ||| |||||||||| ||||||  ||||||||||||||| || ||||||||||||||||||||||||   || | ||||||  |||||| ||||||    
T  12248535 atacaaagcatccatttccaagtttaactatttttgatatctcaggcaataactttagtggtccgctacca---aatgcctattttgaaaagtttgaagc 12248439  T
Q  201 catgaag 207  Q
    |||||||    
T  12248438 catgaag 12248432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 11994294 - 11994497
Alignment:
Q  1 aaaatagaagacaaatttcctgactggattcaaactctgcaagatttgaaagtgctagttttacgagataataagttgcatggtcacattgccaatttaa 100  Q
    |||||||||||| | |||||||| ||| ||||||| |||||||||||||||||  |  |  | ||||| ||||||||||||| |  |||||  ||| |||    
T  11994294 aaaatagaagacgagtttcctgattggcttcaaacactgcaagatttgaaagttttgctgctgcgagacaataagttgcatgatatcattgttaatctaa 11994393  T
Q  101 agatcaagaatccatttcccagtttagttatttttgatatctcgggaaataactttagtggtccgctaccaccgaaagactatttcaaaaagtatgaagc 200  Q
    | |  ||| |||||||||| ||||||  ||||||||||||||  || ||||||||||||||||||||||||   || | ||||||  |||||| ||||||    
T  11994394 atacaaagcatccatttccaagtttaactatttttgatatctaaggcaataactttagtggtccgctacca---aatgcctattttgaaaagtttgaagc 11994490  T
Q  201 catgaag 207  Q
    |||||||    
T  11994491 catgaag 11994497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 162
Target Start/End: Original strand, 32681868 - 32681992
Alignment:
Q  38 tgcaagatttgaaagtgctagttttacgagataataagttgcatggtcacattgccaatttaaagatcaagaatccatttcccagtttagttatttttga 137  Q
    ||||||||||||||||  | ||||| || || || ||||||||||||| ||||| ||||||||||| | |  ||| |||||| || ||| | ||||||||    
T  32681868 tgcaagatttgaaagtattggttttgcgtgacaacaagttgcatggtcccattgtcaatttaaagaacgaacatctatttcctagcttaatcatttttga 32681967  T
Q  138 tatctcgggaaataactttagtggt 162  Q
    |||||| ||||| ||||| ||||||    
T  32681968 tatctctggaaacaacttcagtggt 32681992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 24141004 - 24140786
Alignment:
Q  1 aaaatagaagacaaatttcctgactggattcaaactctgcaagatttgaaagtgctagttttacgagataataagttgcatggtcacattgccaatttaa 100  Q
    |||||||||||||| ||| |||| ||| ||| ||| |||||| ||||| ||||  | ||||| ||||| |||||||| |||||||||||  |||||||||    
T  24141004 aaaatagaagacaatttttctgattggcttctaacactgcaatatttggaagtattggttttgcgagacaataagttacatggtcacatcaccaatttaa 24140905  T
Q  101 agatcaagaatccatttcccagtttagttatttttgatatctcgggaaataactttagtggtccgctaccaccgaaagactatttcaaaaagtatgaagc 200  Q
    ||||  || ||  |||||| || ||| | | |||||||||||| ||||| ||||| ||||||   || |||   |||| |||||| ||||| ||||||||    
T  24140904 agatgtagcatttatttccaaggttaatca-ttttgatatctctggaaacaacttcagtggttttctgcca---aaagcctatttaaaaaattatgaagc 24140809  T
Q  201 catgaaggctgttactcaagtgg 223  Q
    |||||||| ||||||||||||||    
T  24140808 catgaaggatgttactcaagtgg 24140786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 25522949 - 25523168
Alignment:
Q  1 aaaatagaagacaaatttcctgactggattcaaactctgcaagatttgaaagtgctagttttacgagataataagttgcatggtcacattgccaatttaa 100  Q
    |||||||||||||| ||||| || ||| |||||||  |||| |||||||||||| | ||||| ||||| || ||||||||||||  | ||| ||||||||    
T  25522949 aaaatagaagacaattttccggattggcttcaaacaatgcaggatttgaaagtgttggttttgcgagacaacaagttgcatggttcccttgtcaatttaa 25523048  T
Q  101 agatcaagaatccatttcccagtttagttatttttgatatctcgggaaataactttagtggtccgctaccaccgaaagactatttcaaaaagtatgaagc 200  Q
    | |||||| || ||||||  |||||| | |||||||||||||| || || || ||  |||||   ||||||   |||| |||||| | ||| ||||||||    
T  25523049 aaatcaagcattcatttcaaagtttaatcatttttgatatctcaggtaacaatttaggtggttttctacca---aaagcctatttaagaaattatgaagc 25523145  T
Q  201 catgaaggctgttactcaagtgg 223  Q
    |||||||  ||||||||||||||    
T  25523146 catgaagaatgttactcaagtgg 25523168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 3 - 205
Target Start/End: Complemental strand, 8523279 - 8523080
Alignment:
Q  3 aatagaagacaaatttcctgactggattcaaactctgcaagatttgaaagtgctagttttacgagataataagttgcatggtcacattgccaatttaaag 102  Q
    |||||||||||| |||||| | ||| || |||| |||||  ||||||||||| |  |||| ||||| |||||||||||||||  |||||  |||  ||||    
T  8523279 aatagaagacaattttcctcattggcttgaaacactgcattatttgaaagtgttgcttttgcgagacaataagttgcatggtatcattgttaatccaaag 8523180  T
Q  103 atcaagaatccatttcccagtttagttatttttgatatctcgggaaataactttagtggtccgctaccaccgaaagactatttcaaaaagtatgaagcca 202  Q
    |||||| ||||||||||   ||||  |||||||||||||||    ||||||||||||||||| ||||||   |||  |||||||||||||| ||||||||    
T  8523179 atcaagcatccatttccagatttaactatttttgatatctcaaacaataactttagtggtcctctacca---aaatcctatttcaaaaagtttgaagcca 8523083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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