View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0831_low_65 (Length: 280)
Name: NF0831_low_65
Description: NF0831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0831_low_65 |
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Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 4243907 - 4244176
Alignment:
| Q |
1 |
tcatcaactctcaacgaatgtccatctacgaacaatccatcggctggtacttgatcaccaatcttcaaacaaacaacatcaccaacaacaatatcgaata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4243907 |
tcatcaactctcaacgaatgtccatctacgaacaatccatcggctggtacttgatcaccaatcttcaaacaaacaacatcaccaacaacaatatcgaata |
4244006 |
T |
|
| Q |
101 |
ttgataccttttgttggcgcccactacgaaccaaatcaatttgaatatcattgctcacttgagacaatttatcaaattgtttgttttgtttaaagttgct |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4244007 |
ttgataccttttgtcggcgcccactacgaaccaaatcaatttgaatatcattgctcacttgagacaatttatcaaattgtttgttttgtttaaagttgct |
4244106 |
T |
|
| Q |
201 |
tattgcagacattgaaataacaatgaaaacagctagaaaaatgctaccaccatcataccaacctcctttg |
270 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
4244107 |
tattgcagacattgaaataacaatgaaaacagctagaaaaatgctgccaccatcataccaaccttctttg |
4244176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 6186963 - 6187232
Alignment:
| Q |
1 |
tcatcaactctcaacgaatgtccatctacgaacaatccatcggctggtacttgatcaccaatcttcaaacaaacaacatcaccaacaacaatatcgaata |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6186963 |
tcatcaactctcaacgaatgtccatctacgaacaatccatcagccggtacttgatcaccaatcttcaaacaaacaacatcaccaacaacaatatcaaata |
6187062 |
T |
|
| Q |
101 |
ttgataccttttgttggcgcccactacgaaccaaatcaatttgaatatcattgctcacttgagacaatttatcaaattgtttgttttgtttaaagttgct |
200 |
Q |
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| ||||||||| | | || ||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
6187063 |
tagatacctttagccgacgaccacttcgaaccaaatcaatttgaatgtcattgctaacttgagacaatttatcaaattgtttgttttgtttgaagttgct |
6187162 |
T |
|
| Q |
201 |
tattgcagacattgaaataacaatgaaaacagctagaaaaatgctaccaccatcataccaacctcctttg |
270 |
Q |
| |
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||||| ||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
6187163 |
tattgatgacatcgaaataacgatgaaaacagctaggaaaatgctaccaccatcataccaaccttctttg |
6187232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 113
Target Start/End: Original strand, 6170064 - 6170129
Alignment:
| Q |
48 |
tacttgatcaccaatcttcaaacaaacaacatcaccaacaacaatatcgaatattgataccttttg |
113 |
Q |
| |
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||||||||||||||| |||||| |||||||||||||||||||||| || || || |||| |||||| |
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| T |
6170064 |
tacttgatcaccaatattcaaaaaaacaacatcaccaacaacaatctcaaagatcgatatcttttg |
6170129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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