View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0831_low_69 (Length: 267)
Name: NF0831_low_69
Description: NF0831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0831_low_69 |
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| [»] chr5 (7 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 30 - 267
Target Start/End: Original strand, 34232470 - 34232707
Alignment:
| Q |
30 |
gaaatcacttcgaattctcaacttggcgcacaacaaattgaccggtatcattccacaatatcttgctaatttatcatcccttcaagtcttggatctacaa |
129 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
34232470 |
gaaatcacttcgatttctcaacttggcgcacaacaaattgaccggtatcattccacaatatcttgctaatttatcatccctacaagtcttggatctacaa |
34232569 |
T |
|
| Q |
130 |
atgaatagattttatggcgctttgccaagtaacttctcaaagtacagtgaccttcggagtctgaatctcaatggcaaccatatagaaggtcatttgccta |
229 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34232570 |
atgaatagattttatggcgctttgccaagtaacttctcaaagtacagtgaccttcggagtctgaatctcaatggcaaccatatagaaggtcatttgccta |
34232669 |
T |
|
| Q |
230 |
aatctttgtcccactgtaaaacgctggagtttctaaac |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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|
| T |
34232670 |
aatctttgtcccactgtaaaacgctggagtttctaaac |
34232707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 44 - 245
Target Start/End: Original strand, 41713239 - 41713440
Alignment:
| Q |
44 |
ttctcaacttggcgcacaacaaattgaccggtatcattccacaatatcttgctaatttatcatcccttcaagtcttggatctacaaatgaatagatttta |
143 |
Q |
| |
|
||||||||||||| ||||||||||||| |||| ||||||||||| ||||||||||||||||| |||| |||| ||||||||||||||||| | |||||| |
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|
| T |
41713239 |
ttctcaacttggcaaacaacaaattgactggtaccattccacaatgtcttgctaatttatcataccttgaagttttggatctacaaatgaacaaatttta |
41713338 |
T |
|
| Q |
144 |
tggcgctttgccaagtaacttctcaaagtacagtgaccttcggagtctgaatctcaatggcaaccatatagaaggtcatttgcctaaatctttgtcccac |
243 |
Q |
| |
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|||| |||||||||||||||| |||||| ||||||| |||| | ||| |||||| |||||||| | ||||||| ||||||||||| ||||||||| || |
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| T |
41713339 |
tggcactttgccaagtaacttttcaaaggacagtgagcttcatactctaaatctctatggcaacaaattagaaggccatttgcctaattctttgtccaac |
41713438 |
T |
|
| Q |
244 |
tg |
245 |
Q |
| |
|
|| |
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|
| T |
41713439 |
tg |
41713440 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 46 - 246
Target Start/End: Original strand, 41571703 - 41571903
Alignment:
| Q |
46 |
ctcaacttggcgcacaacaaattgaccggtatcattccacaatatcttgctaatttatcatcccttcaagtcttggatctacaaatgaatagattttatg |
145 |
Q |
| |
|
||||||||||| |||||||||||||| || | ||||||||| | |||||| || ||||||||||||||||| |||||| |||||||||| | |||||||| |
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| T |
41571703 |
ctcaacttggcacacaacaaattgacaggcaccattccacattgtcttgcaaacttatcatcccttcaagttttggatttacaaatgaacaaattttatg |
41571802 |
T |
|
| Q |
146 |
gcgctttgccaagtaacttctcaaagtacagtgaccttcggagtctgaatctcaatggcaaccatatagaaggtcatttgcctaaatctttgtcccactg |
245 |
Q |
| |
|
|| |||| ||||||||||| ||||||||| |||||||||| | ||||||| |||| || |||| ||||||| | ||||||||||||||||||| |||| |
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|
| T |
41571803 |
gcactttaccaagtaacttttcaaagtactgtgaccttcgtactctgaatttcaacggaaacctattagaaggccttttgcctaaatctttgtccaactg |
41571902 |
T |
|
| Q |
246 |
t |
246 |
Q |
| |
|
| |
|
|
| T |
41571903 |
t |
41571903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 46 - 267
Target Start/End: Complemental strand, 42129292 - 42129071
Alignment:
| Q |
46 |
ctcaacttggcgcacaacaaattgaccggtatcattccacaatatcttgctaatttatcatcccttcaagtcttggatctacaaatgaatagattttatg |
145 |
Q |
| |
|
||||||||||| ||||| | ||||| | |||||||||||||| ||||||||||| ||| | ||||||||| |||||| | ||||||||||||||||||| |
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|
| T |
42129292 |
ctcaacttggcacacaatcatttgacagatatcattccacaatgtcttgctaattcatcgttccttcaagttttggatttgcaaatgaatagattttatg |
42129193 |
T |
|
| Q |
146 |
gcgctttgccaagtaacttctcaaagtacagtgaccttcggagtctgaatctcaatggcaaccatatagaaggtcatttgcctaaatctttgtcccactg |
245 |
Q |
| |
|
| |||||||||||||||| ||| ||||| |||| |||| || ||| |||||| |||||||| | ||||||||||||| || ||||| ||||| | ||| |
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|
| T |
42129192 |
gaactttgccaagtaacttttcagagtactgtgagcttcagactctaaatctccatggcaacaaattagaaggtcattttccaaaatccttgtctctctg |
42129093 |
T |
|
| Q |
246 |
taaaacgctggagtttctaaac |
267 |
Q |
| |
|
|| || | |||||||||||||| |
|
|
| T |
42129092 |
tacaaagttggagtttctaaac |
42129071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 44 - 245
Target Start/End: Original strand, 34240227 - 34240428
Alignment:
| Q |
44 |
ttctcaacttggcgcacaacaaattgaccggtatcattccacaatatcttgctaatttatcatcccttcaagtcttggatctacaaatgaatagatttta |
143 |
Q |
| |
|
|||||||||||| |||||||| || || |||| ||||||||||| ||||||||||||| ||||||||||| | ||||||||||||||||| | ||||| |
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|
| T |
34240227 |
ttctcaacttgggacacaacaatttcacaggtaacattccacaatgtcttgctaatttaccatcccttcaaattttggatctacaaatgaacaactttta |
34240326 |
T |
|
| Q |
144 |
tggcgctttgccaagtaacttctcaaagtacagtgaccttcggagtctgaatctcaatggcaaccatatagaaggtcatttgcctaaatctttgtcccac |
243 |
Q |
| |
|
|||| ||||||| | |||||| ||||||| |||| | ||| | |||||||||||||| |||||| ||||||| | || |||||||||||||||||| |
|
|
| T |
34240327 |
tggcactttgcctaataacttttcaaagtccagtaaacttattactctgaatctcaatgacaaccaattagaagggtactttcctaaatctttgtcccac |
34240426 |
T |
|
| Q |
244 |
tg |
245 |
Q |
| |
|
|| |
|
|
| T |
34240427 |
tg |
34240428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 46 - 250
Target Start/End: Complemental strand, 42118170 - 42117966
Alignment:
| Q |
46 |
ctcaacttggcgcacaacaaattgaccggtatcattccacaatatcttgctaatttatcatcccttcaagtcttggatctacaaatgaatagattttatg |
145 |
Q |
| |
|
||||||||||| ||||| ||||||| | ||||||||||||| ||||||||||| |||| ||||||||| |||||| | ||||||||||||||||||| |
|
|
| T |
42118170 |
ctcaacttggcacacaatcaattgacagacatcattccacaatgtcttgctaattcatcaatccttcaagttttggatttgcaaatgaatagattttatg |
42118071 |
T |
|
| Q |
146 |
gcgctttgccaagtaacttctcaaagtacagtgaccttcggagtctgaatctcaatggcaaccatatagaaggtcatttgcctaaatctttgtcccactg |
245 |
Q |
| |
|
| |||||||||||||||| ||| || || ||| |||| || ||| |||||| |||||||||| |||||||||| | ||||||||||| || || || |
|
|
| T |
42118070 |
gaactttgccaagtaacttttcagaggactgtgtgcttcagactctaaatctccatggcaaccaattagaaggtcagattcctaaatctttctctcattg |
42117971 |
T |
|
| Q |
246 |
taaaa |
250 |
Q |
| |
|
||||| |
|
|
| T |
42117970 |
taaaa |
42117966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 171
Target Start/End: Complemental strand, 42123919 - 42123782
Alignment:
| Q |
34 |
tcacttcgaattctcaacttggcgcacaacaaattgaccggtatcattccacaatatcttgctaatttatcatcccttcaagtcttggatctacaaatga |
133 |
Q |
| |
|
||||||| | |||||||||||| ||||| | ||||| |||||||||||||||| | ||||| | | | ||||||||||||| ||| |||||||||||| |
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|
| T |
42123919 |
tcacttcaatttctcaacttgggttacaacgatttgactggtatcattccacaatgttttgctgaatcaccatcccttcaagttttgaatctacaaatga |
42123820 |
T |
|
| Q |
134 |
atagattttatggcgctttgccaagtaacttctcaaag |
171 |
Q |
| |
|
| | |||||||| |||||||||||||||| |||||| |
|
|
| T |
42123819 |
acatgttttatggtactttgccaagtaacttttcaaag |
42123782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 65 - 267
Target Start/End: Complemental strand, 12248850 - 12248648
Alignment:
| Q |
65 |
aattgaccggtatcattccacaatatcttgctaatttatcatcccttcaagtcttggatctacaaatgaatagattttatggcgctttgccaagtaactt |
164 |
Q |
| |
|
||||||| |||||||||||||||| ||||||| ||||||||||||||||||| ||| ||||||||||||| | |||| ||||| |||||||||||||||| |
|
|
| T |
12248850 |
aattgacaggtatcattccacaatgtcttgctgatttatcatcccttcaagttttgaatctacaaatgaacaaatttcatggcactttgccaagtaactt |
12248751 |
T |
|
| Q |
165 |
ctcaaagtacagtgaccttcggagtctgaatctcaatggcaaccatatagaaggtcatttgcctaaatctttgtcccactgtaaaacgctggagtttcta |
264 |
Q |
| |
|
||||||| |||| ||| || ||||||||| |||||||||| ||||||| ||| | |||| ||| ||||| | ||||||| | || |||||||| |
|
|
| T |
12248750 |
ctcaaagatgagtgcacttgagactctgaatctttatggcaaccaattagaaggccatattcctagatccttgtctctctgtaaagggttgaagtttcta |
12248651 |
T |
|
| Q |
265 |
aac |
267 |
Q |
| |
|
||| |
|
|
| T |
12248650 |
aac |
12248648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 122 - 218
Target Start/End: Original strand, 11994136 - 11994232
Alignment:
| Q |
122 |
atctacaaatgaatagattttatggcgctttgccaagtaacttctcaaagtacagtgaccttcggagtctgaatctcaatggcaaccatatagaagg |
218 |
Q |
| |
|
||||||||||||| | || | ||||| ||||||||||||||||||||||| | |||| ||| || |||||||||| |||||||||| ||||||| |
|
|
| T |
11994136 |
atctacaaatgaacacatgtcatggcactttgccaagtaacttctcaaaggagagtgcacttgagactctgaatctctatggcaaccaattagaagg |
11994232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 78 - 249
Target Start/End: Complemental strand, 8523483 - 8523312
Alignment:
| Q |
78 |
cattccacaatatcttgctaatttatcatcccttcaagtcttggatctacaaatgaatagattttatggcgctttgccaagtaacttctcaaagtacagt |
177 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||| |||| ||||||||||||||||| | |||| |||| |||||||||||||||| ||||| | ||| |
|
|
| T |
8523483 |
cattccacaatgtcttgctaatttatcataccttgaagttttggatctacaaatgaacaaatttcatggaactttgccaagtaacttttcaaaagaaagt |
8523384 |
T |
|
| Q |
178 |
gaccttcggagtctgaatctcaatggcaaccatatagaaggtcatttgcctaaatctttgtcccactgtaaa |
249 |
Q |
| |
|
|| ||| || |||||||||| |||||||||| ||||||||||| | |||||||| ||||| | ||||||| |
|
|
| T |
8523383 |
gaacttgagactctgaatctctatggcaaccaattagaaggtcatattcctaaatccttgtctctctgtaaa |
8523312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 44 - 171
Target Start/End: Original strand, 25522713 - 25522840
Alignment:
| Q |
44 |
ttctcaacttggcgcacaacaaattgaccggtatcattccacaatatcttgctaatttatcatcccttcaagtcttggatctacaaatgaatagatttta |
143 |
Q |
| |
|
|||||||||||| ||||||| ||||| |||||||||||||||| ||||||| | | | ||||||||||||| ||| |||||||||||||||||||| | |
|
|
| T |
25522713 |
ttctcaacttgggatacaacaatttgactggtatcattccacaatgtcttgctgaatcaacatcccttcaagttttgaatctacaaatgaatagatttca |
25522812 |
T |
|
| Q |
144 |
tggcgctttgccaagtaacttctcaaag |
171 |
Q |
| |
|
|||| |||||||||||||||| |||||| |
|
|
| T |
25522813 |
tggcactttgccaagtaacttttcaaag |
25522840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 59 - 171
Target Start/End: Complemental strand, 24141225 - 24141113
Alignment:
| Q |
59 |
acaacaaattgaccggtatcattccacaatatcttgctaatttatcatcccttcaagtcttggatctacaaatgaatagattttatggcgctttgccaag |
158 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||| || ||| | ||||||||| ||| ||| |||||||||| || | |||| ||||| |||||||||| |
|
|
| T |
24141225 |
acaacaatttgaccggtatcattccacaatgtctttctgattcaccatcccttcgagttttgaatctacaaatcaacacatttcatggcactttgccaag |
24141126 |
T |
|
| Q |
159 |
taacttctcaaag |
171 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
24141125 |
taacttttcaaag |
24141113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 171
Target Start/End: Complemental strand, 11118539 - 11118427
Alignment:
| Q |
59 |
acaacaaattgaccggtatcattccacaatatcttgctaatttatcatcccttcaagtcttggatctacaaatgaatagattttatggcgctttgccaag |
158 |
Q |
| |
|
||||||| ||||| ||| |||||||||||| ||||||| | | | ||| |||| | || ||| ||||||||||||| | |||| ||||| ||||||| || |
|
|
| T |
11118539 |
acaacaatttgactggtgtcattccacaatgtcttgctgaatcaccattcctttatgttttgaatctacaaatgaacaaatttcatggcactttgcctag |
11118440 |
T |
|
| Q |
159 |
taacttctcaaag |
171 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
11118439 |
taacttttcaaag |
11118427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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