View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0831_low_73 (Length: 256)
Name: NF0831_low_73
Description: NF0831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0831_low_73 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 24 - 246
Target Start/End: Complemental strand, 6258861 - 6258639
Alignment:
| Q |
24 |
aaatattatagaaatcagatgtgtagatataaagaagatttgaaatttgtaatgcacctaaatgccaaatcaccccaacagatgatgtgtcctccgtaga |
123 |
Q |
| |
|
||||| |||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6258861 |
aaatagtatataaatcaaatgtatagatataaagaagatttgaaatttgtaatgcacctaaatgccaaatcaccccaacagatgatgtgtcctccgtaga |
6258762 |
T |
|
| Q |
124 |
caaatcatcaataacaaactgaaggtctaagcttgtagattcagtgaactttttaaagaactctataatttcctgtaataatcaataaaacaatttttat |
223 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6258761 |
caaatcatcaataacaaactgtaggtctaagcttgtagactcagtgaactttttgaagaactctataatttcctgtaataatcaataaaacaatttttat |
6258662 |
T |
|
| Q |
224 |
aaacttcttctaactaaatacaa |
246 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
6258661 |
aaacttcttctaactaaatacaa |
6258639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 278 times since January 2019
Visitors: 6127