View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0831_low_75 (Length: 256)
Name: NF0831_low_75
Description: NF0831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0831_low_75 |
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| [»] chr4 (6 HSPs) |
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| [»] chr5 (3 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 35 - 256
Target Start/End: Original strand, 55705792 - 55706013
Alignment:
| Q |
35 |
atacgttggttgatgagctatttgccaagagagaagatcacgattatacattattcgagctaatgcggctctttccagatctatgactatagacaagatg |
134 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
55705792 |
atacgttggttgatgagctatttgccaagagagaagatcacgatcatacattatttgagctaacgcggctctttccagatctatgactatagacaagatg |
55705891 |
T |
|
| Q |
135 |
gaagaggttgcgcatgggagggtttggaccggtaaagacgcagcatctcatggtttggttgatgctattggtgggatatcgcgtgctattgctattgcaa |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
55705892 |
gaagaggttgcgcatgggagggtttggaccggtaaagacgcagcatctcatggtttggttgatgctattggtgggatatcgcgtgctattgctattacaa |
55705991 |
T |
|
| Q |
235 |
aattgaaagctaatatacctca |
256 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
55705992 |
aattgaaagctaatatacctca |
55706013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 124 - 256
Target Start/End: Complemental strand, 45876881 - 45876749
Alignment:
| Q |
124 |
tagacaagatggaagaggttgcgcatgggagggtttggaccggtaaagacgcagcatctcatggtttggttgatgctattggtgggatatcgcgtgctat |
223 |
Q |
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|||||||||||||||||||||| || |||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||| |||| |||||||| |
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| T |
45876881 |
tagacaagatggaagaggttgcacaagggagggtttggaccggtaaggatgcagcatcccatggtttggttgatgctattggtgggctatctcgtgctat |
45876782 |
T |
|
| Q |
224 |
tgctattgcaaaattgaaagctaatatacctca |
256 |
Q |
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|||||| |||||||||||||||||||||||||| |
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| T |
45876781 |
tgctatagcaaaattgaaagctaatatacctca |
45876749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 88 - 256
Target Start/End: Complemental strand, 56208712 - 56208544
Alignment:
| Q |
88 |
ttcgagctaatgcggctctttccagatctatgactatagacaagatggaagaggttgcgcatgggagggtttggaccggtaaagacgcagcatctcatgg |
187 |
Q |
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|||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||| || |||||||||| |||||||||||| ||| ||||| ||| |
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| T |
56208712 |
ttcgagataatgcggctctttccagatcaatgactatagatgagatggaagaggttgcacaggggagggtttagaccggtaaagatgcactatctcttgg |
56208613 |
T |
|
| Q |
188 |
tttggttgatgctattggtgggatatcgcgtgctattgctattgcaaaattgaaagctaatatacctca |
256 |
Q |
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|||||||||||||||||||||| |||| |||||||||||||| ||||||||||| ||| ||||||||| |
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| T |
56208612 |
tttggttgatgctattggtgggctatctcgtgctattgctatagcaaaattgaaggctggtatacctca |
56208544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 97 - 256
Target Start/End: Original strand, 47293429 - 47293588
Alignment:
| Q |
97 |
atgcggctctttccagatctatgactatagacaagatggaagaggttgcgcatgggagggtttggaccggtaaagacgcagcatctcatggtttggttga |
196 |
Q |
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||||||||||||||||||| ||||| ||||||||||||||||||||||| || || ||| |||||||| |||| ||||||| |||||||||||||||||| |
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| T |
47293429 |
atgcggctctttccagatcaatgaccatagacaagatggaagaggttgcacagggaaggatttggaccagtaaggacgcagtatctcatggtttggttga |
47293528 |
T |
|
| Q |
197 |
tgctattggtgggatatcgcgtgctattgctattgcaaaattgaaagctaatatacctca |
256 |
Q |
| |
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|||||||||||| ||||||| ||||||||||| ||||||||||| || ||||||||||| |
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| T |
47293529 |
tgctattggtggactatcgcgcgctattgctatagcaaaattgaaggccaatatacctca |
47293588 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 124 - 256
Target Start/End: Complemental strand, 45858950 - 45858818
Alignment:
| Q |
124 |
tagacaagatggaagaggttgcgcatgggagggtttggaccggtaaagacgcagcatctcatggtttggttgatgctattggtgggatatcgcgtgctat |
223 |
Q |
| |
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|||||||||||||||||| ||| || | |||||||||||||||||| || |||| |||||||||| |||||||||||||||||||| |||| |||||||| |
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| T |
45858950 |
tagacaagatggaagaggctgcacaggagagggtttggaccggtaaggatgcagtatctcatggtctggttgatgctattggtgggctatcacgtgctat |
45858851 |
T |
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| Q |
224 |
tgctattgcaaaattgaaagctaatatacctca |
256 |
Q |
| |
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|||||| || |||||||| || ||||||||||| |
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| T |
45858850 |
tgctatagccaaattgaaggccaatatacctca |
45858818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 106 - 256
Target Start/End: Original strand, 54304200 - 54304356
Alignment:
| Q |
106 |
tttccagatctatgactatagacaagatggaagaggttgcgcatgggaggg------tttggaccggtaaagacgcagcatctcatggtttggttgatgc |
199 |
Q |
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|||||| ||| ||||| |||||||| |||||||||||| | || ||||||| ||||||| ||||| |||||| |||||| |||||||||||||| |
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| T |
54304200 |
tttccaaatcaatgacaatagacaaaatggaagaggttccacaggggagggggaaggtttggactggtaaggacgcaacatctctcggtttggttgatgc |
54304299 |
T |
|
| Q |
200 |
tattggtgggatatcgcgtgctattgctattgcaaaattgaaagctaatatacctca |
256 |
Q |
| |
|
|||||| ||||| || |||||||||||||| ||||||||||| || ||||||||||| |
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| T |
54304300 |
tattggcgggatgtctcgtgctattgctatagcaaaattgaaggccaatatacctca |
54304356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 101; Significance: 4e-50; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 124 - 256
Target Start/End: Original strand, 35854542 - 35854674
Alignment:
| Q |
124 |
tagacaagatggaagaggttgcgcatgggagggtttggaccggtaaagacgcagcatctcatggtttggttgatgctattggtgggatatcgcgtgctat |
223 |
Q |
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||||||||||| || ||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35854542 |
tagacaagatgaaaaaggttgcacatgggaggatttggaccggtaaggacgcagcatctcatggtttggttgatgctattggtgggatatcgcgtgctat |
35854641 |
T |
|
| Q |
224 |
tgctattgcaaaattgaaagctaatatacctca |
256 |
Q |
| |
|
|||||| ||||||||||| || ||||||||||| |
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| T |
35854642 |
tgctatagcaaaattgaaggccaatatacctca |
35854674 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 126 - 256
Target Start/End: Original strand, 10521303 - 10521433
Alignment:
| Q |
126 |
gacaagatggaagaggttgcgcatgggagggtttggaccggtaaagacgcagcatctcatggtttggttgatgctattggtgggatatcgcgtgctattg |
225 |
Q |
| |
|
||||||||| ||||| || | ||| ||||| |||||| ||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10521303 |
gacaagatgaaagagattccacataggaggatttggatcgggaaggacgcagcatctcaaggtttggttgatgctattggtgggatatcgcgtgctattg |
10521402 |
T |
|
| Q |
226 |
ctattgcaaaattgaaagctaatatacctca |
256 |
Q |
| |
|
|||| |||||||| || || ||||||||||| |
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|
| T |
10521403 |
ctatcgcaaaattcaaggccaatatacctca |
10521433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 124 - 200
Target Start/End: Complemental strand, 35802580 - 35802504
Alignment:
| Q |
124 |
tagacaagatggaagaggttgcgcatgggagggtttggaccggtaaagacgcagcatctcatggtttggttgatgct |
200 |
Q |
| |
|
||||||||||| || ||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
35802580 |
tagacaagatgaaaaaggttgcacatgggaggatttggaccggtaaggacgcagcatctcatggtttggttgatgct |
35802504 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 104 - 241
Target Start/End: Complemental strand, 7972241 - 7972104
Alignment:
| Q |
104 |
tctttccagatctatgactatagacaagatggaagaggttgcgcatgggagggtttggaccggtaaagacgcagcatctcatggtttggttgatgctatt |
203 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||||||||| || ||||| |||||||||||||||| |||| |||| |||||||||| |||||||| |
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| T |
7972241 |
tctttccagatcaatgactgtagacaagatggaagaggttgcacagaggaggatttggaccggtaaagatgcagtatctaatggtttggtcgatgctatc |
7972142 |
T |
|
| Q |
204 |
ggtgggatatcgcgtgctattgctattgcaaaattgaa |
241 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
7972141 |
agtggactatcgcgtgctattgctatagcaaaattgaa |
7972104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 88 - 256
Target Start/End: Complemental strand, 7961887 - 7961719
Alignment:
| Q |
88 |
ttcgagctaatgcggctctttccagatctatgactatagacaagatggaagaggttgcgcatgggagggtttggaccggtaaagacgcagcatctcatgg |
187 |
Q |
| |
|
|||||| | ||||||||||||| |||| ||||||||||||||||||||||||||||| || ||||| ||||||| |||||||| ||| |||| ||| |
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|
| T |
7961887 |
ttcgagatgatgcggctctttcaagattaatgactatagacaagatggaagaggttgcacaagggagaatttggactggtaaagatgcaatatctaatga |
7961788 |
T |
|
| Q |
188 |
tttggttgatgctattggtgggatatcgcgtgctattgctattgcaaaattgaaagctaatatacctca |
256 |
Q |
| |
|
|||||| |||||||||||||| ||||||| ||||||||||| ||||||||||| || ||||| ||||| |
|
|
| T |
7961787 |
tttggtcgatgctattggtggaatatcgcacgctattgctatagcaaaattgaaggccaatattcctca |
7961719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 126 - 256
Target Start/End: Original strand, 24357457 - 24357587
Alignment:
| Q |
126 |
gacaagatggaagaggttgcgcatgggagggtttggaccggtaaagacgcagcatctcatggtttggttgatgctattggtgggatatcgcgtgctattg |
225 |
Q |
| |
|
||||||||||| |||| || || ||||| |||||||| |||||||| |||||||| |||||||||||||||||||||||||| | || || ||||||| |
|
|
| T |
24357457 |
gacaagatggagaaggtagcacaggggagagtttggactggtaaagatgcagcatcacatggtttggttgatgctattggtggcctttcccgagctattg |
24357556 |
T |
|
| Q |
226 |
ctattgcaaaattgaaagctaatatacctca |
256 |
Q |
| |
|
| || ||||||||||| || ||||||||||| |
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|
| T |
24357557 |
ccatagcaaaattgaaggccaatatacctca |
24357587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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