View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0831_low_77 (Length: 252)
Name: NF0831_low_77
Description: NF0831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0831_low_77 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 29 - 252
Target Start/End: Original strand, 36199435 - 36199658
Alignment:
| Q |
29 |
atcattgttaggaatgtaaatgtccggaaaataagtccctgcaatatattccataatctgttcttgctataaaagtgccaaaccccttttttcagcctac |
128 |
Q |
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| T |
36199435 |
atcattgttaggaatgtaaatgtccggaaaataagcccctgcaatatcttctataatctgttcttgctataaaagtgccaaaccccttttttcagcctac |
36199534 |
T |
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| Q |
129 |
cctacacgaggcacagggtatctgaggcctgtgatgagatgagagttgccgcaacacaattagattagggaaagattaaatttcatgcctccacctgaaa |
228 |
Q |
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| T |
36199535 |
cctacacgaggcacagggtatctgaggcctttgatgagatgagagttgccgcaccacaattagattagggaaagattaaatttcatgcctccacctgaaa |
36199634 |
T |
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| Q |
229 |
ttgaaaaatgaaataagccaaaca |
252 |
Q |
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| T |
36199635 |
ttgaaaaatgaaataagccaaaca |
36199658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 166 - 252
Target Start/End: Original strand, 36183859 - 36183945
Alignment:
| Q |
166 |
gatgagagttgccgcaacacaattagattagggaaagattaaatttcatgcctccacctgaaattgaaaaatgaaataagccaaaca |
252 |
Q |
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| T |
36183859 |
gatgagagttgacgcaccacaattagattagggaaacattaaatttcaggtctccatctgaaattgaaaaattaaataagccaaaca |
36183945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 36209268 - 36209334
Alignment:
| Q |
186 |
aattagattagggaaagattaaatttcatgcctccacctgaaattgaaaaatgaaataagccaaaca |
252 |
Q |
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| T |
36209268 |
aattagattaaggaatgattaaatttcacacctccgcctgaaattgaaaaataaaataagccaaaca |
36209334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 187 - 252
Target Start/End: Original strand, 36196140 - 36196202
Alignment:
| Q |
187 |
attagattagggaaagattaaatttcatgcctccacctgaaattgaaaaatgaaataagccaaaca |
252 |
Q |
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| T |
36196140 |
attagattaaggaaagattaaatttca---caccacctgaaattgaaaaataaaataagccaaaca |
36196202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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