View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0831_low_79 (Length: 251)
Name: NF0831_low_79
Description: NF0831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0831_low_79 |
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Alignment Details
Target: chr7 (Bit Score: 119; Significance: 7e-61; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 105 - 223
Target Start/End: Original strand, 21013820 - 21013938
Alignment:
| Q |
105 |
ccctattctctactatgaatttcaatttccttcatacaaaaatagaaacatgaaattacccaaatgaaaattctcaaaaccaaatcaacacttacatgca |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21013820 |
ccctattctctactatgaatttcaatttccttcatacaaaaatagaaacatgaaattacccaaatgaaaattctcaaaaccaaatcaacacttacatgca |
21013919 |
T |
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| Q |
205 |
actaattcaacacataaat |
223 |
Q |
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||||||||||||||||||| |
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| T |
21013920 |
actaattcaacacataaat |
21013938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 105 - 225
Target Start/End: Original strand, 20962406 - 20962526
Alignment:
| Q |
105 |
ccctattctctactatgaatttcaatttccttcatacaaaaatagaaacatgaaattacccaaatgaaaattctcaaaaccaaatcaacacttacatgca |
204 |
Q |
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|||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
20962406 |
ccctattccctactatgaatttcaatttccttcatacaaagatagaaacatgaaaatacccaaatgaaaattctaaaaaccaaatcaacactaacatgca |
20962505 |
T |
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| Q |
205 |
actaattcaacacataaatga |
225 |
Q |
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||||| ||||||||||||||| |
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| T |
20962506 |
actaactcaacacataaatga |
20962526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 21013716 - 21013758
Alignment:
| Q |
1 |
tgtaaaacccacttatttgaaaaattcttattattatcacatg |
43 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||| |
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| T |
21013716 |
tgtaaaacccacttatttgaaaaattcttaatattatcacatg |
21013758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 23483750 - 23483786
Alignment:
| Q |
1 |
tgtaaaacccacttatttgaaaaattcttattattat |
37 |
Q |
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|||||| ||| |||||||||||||||||||||||||| |
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| T |
23483750 |
tgtaaatccctcttatttgaaaaattcttattattat |
23483786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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