View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0831_low_8 (Length: 539)

Name: NF0831_low_8
Description: NF0831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0831_low_8
NF0831_low_8
[»] chr4 (5 HSPs)
chr4 (30-388)||(43864826-43865184)
chr4 (406-496)||(43864752-43864836)
chr4 (495-532)||(21351352-21351389)
chr4 (494-531)||(22118266-22118303)
chr4 (495-531)||(36518418-36518454)
[»] chr6 (3 HSPs)
chr6 (494-532)||(35039092-35039130)
chr6 (494-528)||(18310006-18310040)
chr6 (494-528)||(17936979-17937013)
[»] chr5 (3 HSPs)
chr5 (494-531)||(20745700-20745737)
chr5 (495-531)||(20337169-20337205)
chr5 (490-531)||(17994790-17994831)
[»] chr1 (1 HSPs)
chr1 (495-531)||(44404658-44404694)
[»] chr2 (2 HSPs)
chr2 (496-531)||(5250322-5250357)
chr2 (488-520)||(11704529-11704561)
[»] chr3 (3 HSPs)
chr3 (496-531)||(50736612-50736647)
chr3 (496-531)||(50776208-50776243)
chr3 (495-527)||(16339284-16339316)
[»] chr7 (2 HSPs)
chr7 (501-531)||(17470775-17470805)
chr7 (501-531)||(17582409-17582439)


Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 30 - 388
Target Start/End: Complemental strand, 43865184 - 43864826
Alignment:
Q  30 taacagaaattgaaggtaacatatgtgttacaagtcaacactaatttgtgtttcttattatacgagagttacaatgcattaattagagaacaattgaaat 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43865184 taacagaaattgaaggtaacatatgtgttacaagtcaacactaatttgtgtttcttattatacgagagttacaatgcattaattagagaacaattgaaat 43865085  T
Q  130 atggctggaattgtttcctctgaaaaaacctgacctttatattctagtaaggttttattttattactatgtttgtaactgttactgaaattaattgatca 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  43865084 atggctggaattgtttcctctgaaaaaacctgacctttatattctagtaaggttttattttattactatgtttgtaactgttagtgaaattaattgatca 43864985  T
Q  230 atagttacaactttcagtttaattaccatgtttgtaacgttatgaaatttgtttaaaattattatggtcacacttttctttgtgaatagattgtatacaa 329  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43864984 atagttacaactttcagtttaattactatgtttgtaacgttatgaaatttgtttaaaattattatggtcacacttttctttgtgaatagattgtatacaa 43864885  T
Q  330 atgcatgctgtagtgtgtgaatgccacaaatccatgctaacatattctaagattatgac 388  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  43864884 atgcatgctgtagtgtgtaaatgccacaaatccatgctaacatattctaagattatgac 43864826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 406 - 496
Target Start/End: Complemental strand, 43864836 - 43864752
Alignment:
Q  406 aagattatgacttaattagcttatttctttttgttatgaatatgaatgaaattagtgtcacttgtacatagtgaagttgtaatctatctat 496  Q
    |||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||    
T  43864836 aagattatgacttaattagcttatttctttttgttatgaat------gaaattagtgtcacttgtacatagtgaagttgtaatctatctat 43864752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 495 - 532
Target Start/End: Original strand, 21351352 - 21351389
Alignment:
Q  495 atctacttactatattataaaattaaatgcctatgata 532  Q
    ||||||||||||||||||||||||||||||||||||||    
T  21351352 atctacttactatattataaaattaaatgcctatgata 21351389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 494 - 531
Target Start/End: Complemental strand, 22118303 - 22118266
Alignment:
Q  494 tatctacttactatattataaaattaaatgcctatgat 531  Q
    |||||||||||||||||||||||||||||| |||||||    
T  22118303 tatctacttactatattataaaattaaatgtctatgat 22118266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 495 - 531
Target Start/End: Complemental strand, 36518454 - 36518418
Alignment:
Q  495 atctacttactatattataaaattaaatgcctatgat 531  Q
    ||||||||||||||||| |||||||||||||||||||    
T  36518454 atctacttactatattacaaaattaaatgcctatgat 36518418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 494 - 532
Target Start/End: Original strand, 35039092 - 35039130
Alignment:
Q  494 tatctacttactatattataaaattaaatgcctatgata 532  Q
    |||||||||||||||||||||||||||||||||||||||    
T  35039092 tatctacttactatattataaaattaaatgcctatgata 35039130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 494 - 528
Target Start/End: Original strand, 18310006 - 18310040
Alignment:
Q  494 tatctacttactatattataaaattaaatgcctat 528  Q
    |||||||||||||||||||||||||||||||||||    
T  18310006 tatctacttactatattataaaattaaatgcctat 18310040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 494 - 528
Target Start/End: Original strand, 17936979 - 17937013
Alignment:
Q  494 tatctacttactatattataaaattaaatgcctat 528  Q
    ||||||||| |||||||||||||||||||||||||    
T  17936979 tatctacttgctatattataaaattaaatgcctat 17937013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 494 - 531
Target Start/End: Original strand, 20745700 - 20745737
Alignment:
Q  494 tatctacttactatattataaaattaaatgcctatgat 531  Q
    ||||||||||||||||||||||||||||||||||||||    
T  20745700 tatctacttactatattataaaattaaatgcctatgat 20745737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 495 - 531
Target Start/End: Original strand, 20337169 - 20337205
Alignment:
Q  495 atctacttactatattataaaattaaatgcctatgat 531  Q
    |||||||||||||||||||||||||||||||||||||    
T  20337169 atctacttactatattataaaattaaatgcctatgat 20337205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 490 - 531
Target Start/End: Original strand, 17994790 - 17994831
Alignment:
Q  490 tatctatctacttactatattataaaattaaatgcctatgat 531  Q
    |||| ||||||||||||||||||||| |||||||||||||||    
T  17994790 tatcaatctacttactatattataaagttaaatgcctatgat 17994831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 495 - 531
Target Start/End: Original strand, 44404658 - 44404694
Alignment:
Q  495 atctacttactatattataaaattaaatgcctatgat 531  Q
    |||||||||||||||||||||||||||||||||||||    
T  44404658 atctacttactatattataaaattaaatgcctatgat 44404694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 496 - 531
Target Start/End: Original strand, 5250322 - 5250357
Alignment:
Q  496 tctacttactatattataaaattaaatgcctatgat 531  Q
    ||||||||||||||||||||||||||||||||||||    
T  5250322 tctacttactatattataaaattaaatgcctatgat 5250357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 488 - 520
Target Start/End: Original strand, 11704529 - 11704561
Alignment:
Q  488 tctatctatctacttactatattataaaattaa 520  Q
    |||||||||||||||||||||||||||||||||    
T  11704529 tctatctatctacttactatattataaaattaa 11704561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 496 - 531
Target Start/End: Original strand, 50736612 - 50736647
Alignment:
Q  496 tctacttactatattataaaattaaatgcctatgat 531  Q
    |||||||||||||||||||||||||||| |||||||    
T  50736612 tctacttactatattataaaattaaatgtctatgat 50736647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 496 - 531
Target Start/End: Complemental strand, 50776243 - 50776208
Alignment:
Q  496 tctacttactatattataaaattaaatgcctatgat 531  Q
    |||||||||||||||||||||||||||| |||||||    
T  50776243 tctacttactatattataaaattaaatgtctatgat 50776208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 495 - 527
Target Start/End: Original strand, 16339284 - 16339316
Alignment:
Q  495 atctacttactatattataaaattaaatgccta 527  Q
    |||||||||||||||||||||||||||| ||||    
T  16339284 atctacttactatattataaaattaaattccta 16339316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 501 - 531
Target Start/End: Original strand, 17470775 - 17470805
Alignment:
Q  501 ttactatattataaaattaaatgcctatgat 531  Q
    |||||||||||||||||||||||||||||||    
T  17470775 ttactatattataaaattaaatgcctatgat 17470805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 501 - 531
Target Start/End: Complemental strand, 17582439 - 17582409
Alignment:
Q  501 ttactatattataaaattaaatgcctatgat 531  Q
    |||||||||||||||||||||||||||||||    
T  17582439 ttactatattataaaattaaatgcctatgat 17582409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 177 times since January 2019
Visitors: 6125