View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0831_low_80 (Length: 251)
Name: NF0831_low_80
Description: NF0831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0831_low_80 |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 36199755 - 36199992
Alignment:
| Q |
1 |
taaaaactgtattccaatgaatctgtatgaaaatcaataaagcatcccctaaaatattgagattccctacatagtnnnnnnnnncctatacaattacata |
100 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
36199755 |
taaaacctgtattccaatgaatctgtatgaaaatcaataaagcatcccctaaaatattgagattccctacatagtaaaaaaaa-cctatacaattacata |
36199853 |
T |
|
| Q |
101 |
attatttatcaggtcaaaacatagtctgttaggatatcccattcaattgatcaaaacacaagatatcaaaagaaattttcttttctcaattttattgatc |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36199854 |
attatttatcag-tcaaaacatagtctgttaggatatcccattcaattgatcaaaacacaagatatcaaaagaaattttcttttctcaattttattgatc |
36199952 |
T |
|
| Q |
201 |
aatcatcattctaattagaaccattactttgtttattcat |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
36199953 |
aatcatcattctaattagaaccattactttgtttattcat |
36199992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 124
Target Start/End: Original strand, 36214268 - 36214303
Alignment:
| Q |
89 |
tacaattacataattatttatcaggtcaaaacatag |
124 |
Q |
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|
|||||||||||||||||||||||||||||||||||| |
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|
| T |
36214268 |
tacaattacataattatttatcaggtcaaaacatag |
36214303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 226
Target Start/End: Original strand, 16958304 - 16958394
Alignment:
| Q |
135 |
tatcccattcaattgatcaaaacacaagatatcaaaagaaattttcttttctcaattttattgatcaatcatcattctaattagaaccatta |
226 |
Q |
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||||||||||||||||| | |||| ||||||| |||||| | |||||||||||||||| ||||||||| | |||||| |||||| ||||| |
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| T |
16958304 |
tatcccattcaattgataataaca-aagatattcaaagaattcttcttttctcaattttgctgatcaatctttattctagttagaatcatta |
16958394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 30036685 - 30036629
Alignment:
| Q |
169 |
aaagaaattttcttttctcaattttattgatcaatcatcattctaattagaaccatt |
225 |
Q |
| |
|
|||||| | |||||||||||||||| |||||||||| | |||||| |||||| |||| |
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|
| T |
30036685 |
aaagaattcttcttttctcaatttttttgatcaatctttattctatttagaatcatt |
30036629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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