View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0831_low_81 (Length: 251)
Name: NF0831_low_81
Description: NF0831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0831_low_81 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 32515375 - 32515140
Alignment:
| Q |
1 |
caaaagatgaacttaatgatcagattactatgctgttgtccaaggagatgcataacaacattgatttgaggagtaacaaagcccagaaactctacgttgt |
100 |
Q |
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| T |
32515375 |
caaaagatgaacttaatgatcagattactatgctgttgtccaaggagatgcataacaacattgatttgaggagtaacaaagcccagaaactctacgttgt |
32515276 |
T |
|
| Q |
101 |
ttatctcattaacatgacaacaaatattcgtatttggaatgctttgaactcagatatggaagaatccaacatgaatataattaaaaaagtgttgcagcca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32515275 |
ttatctcattaacatgacaacaaatattcgtatttggaatgctttgaactcagatatggaagaatccaacatgaatataattaaaaaagtgttgcagcca |
32515176 |
T |
|
| Q |
201 |
tattcaagggtaagaatcacaaaattatttattggt |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
32515175 |
tattcaagggtaagaatcacaaaattatttattggt |
32515140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 61 - 222
Target Start/End: Original strand, 32542428 - 32542589
Alignment:
| Q |
61 |
ttgatttgaggagtaacaaagcccagaaactctacgttgtttatctcattaacatgacaacaaatattcgtatttggaatgctttgaactcagatatgga |
160 |
Q |
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|||| |||| ||| |||||||| ||||||||||| | |||| ||||||||||||||| || ||| ||||||||||||| || ||||||||||| ||||| |
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| T |
32542428 |
ttgacttgaagaggaacaaagcacagaaactctatgcagtttgtctcattaacatgactactaatgttcgtatttggaaagccttgaactcagagatgga |
32542527 |
T |
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| Q |
161 |
agaatccaacatgaatataattaaaaaagtgttgcagccatattcaagggtaagaatcacaa |
222 |
Q |
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| T |
32542528 |
gggatcggacatgaatataattcaaaaagtgttgcagccttattcaagggtaagaatcacaa |
32542589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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