View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0831_low_9 (Length: 532)
Name: NF0831_low_9
Description: NF0831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0831_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 46 - 251
Target Start/End: Original strand, 38348534 - 38348739
Alignment:
| Q |
46 |
taagtaaccctaaccttgactaggtcatgctgtgacagcctcactctttcctattttgtggaccaagttcctaatcctaacgatctcttcaacatactga |
145 |
Q |
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| T |
38348534 |
taagtaaccctaaccttgactaggtcatgctgtgacagcctcactctttcctattttgtggaccaagttcctaatcctaacgatctcttcaacatactga |
38348633 |
T |
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| Q |
146 |
aagacgcacaacaaactttaaacctaaaaggtgagtgaaattactgttagaagaagcatctctcgtttattcctttcttagtttctgttatgttctggca |
245 |
Q |
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| T |
38348634 |
aagacacacaacaaactttaaacctaaaaggtgagtgaaattactgttagaagaagcatctctcgtttattcctttcttagtttctgttatgttctggca |
38348733 |
T |
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| Q |
246 |
ggcgtg |
251 |
Q |
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|||||| |
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| T |
38348734 |
ggcgtg |
38348739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 316 - 436
Target Start/End: Original strand, 38348804 - 38348924
Alignment:
| Q |
316 |
catgccaacctggttttactgtttcttgttgactcttaatttctatgaatagtatatttttatattgtcctttactttggttttcttgacctagattgtt |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38348804 |
catgccaacctggttttactgtttcttgttgactcttaatttctatgaatagtatatttttatattgtcctttactttggttttcttgacctagattgtt |
38348903 |
T |
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| Q |
416 |
attttaggtcttggttcattg |
436 |
Q |
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| T |
38348904 |
attttaggtcttggttcattg |
38348924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 101
Target Start/End: Complemental strand, 31573108 - 31573063
Alignment:
| Q |
56 |
taaccttgactaggtcatgctgtgacagcctcactctttcctattt |
101 |
Q |
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| T |
31573108 |
taaccctgactaggtcatgctgtgctagcctcactccttcctattt |
31573063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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