View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0831_low_94 (Length: 204)
Name: NF0831_low_94
Description: NF0831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0831_low_94 |
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Alignment Details
Target: chr7 (Bit Score: 132; Significance: 9e-69; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 20 - 193
Target Start/End: Complemental strand, 27420485 - 27420310
Alignment:
| Q |
20 |
tactgggtttcgtcaccccttttaaag-atcaaattgaagatttagaaagnnnnnnnngtgagctggatttcttgcaaattgggttattcattcgtttta |
118 |
Q |
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| T |
27420485 |
tactgggtttcgtcaccccttttaaaggatcaaattgaagatttagaaagaaaaaaaagtgagctggatttcttgcaaattgggttattcattcgtttta |
27420386 |
T |
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| Q |
119 |
tattccaaaaactcag-cattataattgtggaattaattggtcggcggtggtttccaacacaataccattgcaaca |
193 |
Q |
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|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27420385 |
tattccaaaaactcagccatgataattgtggaattaattggtcggcggtggtttccaacacaataccattgcaaca |
27420310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 20 - 193
Target Start/End: Complemental strand, 44607692 - 44607517
Alignment:
| Q |
20 |
tactgggtttcgtcaccccttttaaag-atcaaattgaagatttagaaagnnnnnnnngtgagctggatttcttgcaaattgggttattcattcgtttta |
118 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
44607692 |
tactgggtttcgtcaccccttttaaaggatcaaattgaagatttagaaagaaaaaaaagtgagctggatttcttgcaaattgggttattcattcgtttta |
44607593 |
T |
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| Q |
119 |
tattccaaaaactcag-cattataattgtggaattaattggtcggcggtggtttccaacacaataccattgcaaca |
193 |
Q |
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| T |
44607592 |
tattccaaaaactcagtcatgataattgtggaattaattggtcggcggtggtttccaacacaataccattgcaaca |
44607517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 22 - 185
Target Start/End: Original strand, 18712189 - 18712355
Alignment:
| Q |
22 |
ctgggtttcgtcaccccttttaaag-atcaaattgaagatttagaaagnnnnnnnn-gtgagctggatttcttgcaaattgggttattcattcgttttat |
119 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
18712189 |
ctgggtttcgtcaccccttttaaaggatcaaattgaagatttagaaagaaaaaaaaagtgagttggatttgttgcaaattgggttattcattcgttttat |
18712288 |
T |
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| Q |
120 |
attccaaaaactcag-cattataattgtggaattaattggtcggcggtggtttccaacacaatacca |
185 |
Q |
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||||||||||||||| ||| |||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
18712289 |
attccaaaaactcagccatgataattgtggaattaattggtcggtgatggtttccaacacaatacca |
18712355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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