View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0832_low_2 (Length: 607)
Name: NF0832_low_2
Description: NF0832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0832_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 236 - 578
Target Start/End: Original strand, 28916836 - 28917175
Alignment:
| Q |
236 |
ctggtttaactcttgacgtgccaaccaagtcgtcagaatcagaacctataaagtcacttgcatcagattcaccggtatcatcttccccctcacctctttc |
335 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
28916836 |
ctggtttaactcttgacgtgccaaccaagtcgtcagaatcagaacctataaagtcacttgcatcagattcaccggtatc---ttccccctcacctctttc |
28916932 |
T |
|
| Q |
336 |
atacggttccaagtcaagcttgatgtttccatttttaatgatgtcacgggcaatataaacatcctgagaattccacccttccnnnnnnnngataacttga |
435 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
28916933 |
atacggttccaagtcacgcttgatgtttccatttttaatgatgtcacgggcaatataaacatcctgagaattccacccttccttttttttgataacttga |
28917032 |
T |
|
| Q |
436 |
taatattctaaaaagtaactttcaactgtatctggatctctcatatctatcttctcctgcaaatgaaaatcacataattataaaacatatggagagagag |
535 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28917033 |
taatattctaaaaagtaactttcaactgtatctggatctctcatatctatcttctcctgcaaatgaaaatcacataattataaaacatatggagagagag |
28917132 |
T |
|
| Q |
536 |
ggagagaaagtggtaatacaaggcatgattgaaacaaatatct |
578 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28917133 |
ggagagaaagtggtaatacaaggcatgattgaaacaaatatct |
28917175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 240 - 504
Target Start/End: Original strand, 28926072 - 28926336
Alignment:
| Q |
240 |
tttaactcttgacgtgccaaccaagtcgtcagaatcagaacctataaagtcacttgcatcagattcaccggtatcatcttccccctcacctctttcatac |
339 |
Q |
| |
|
||||||||||||||| || | ||||||||| ||||||| |||||||||| || ||||||| ||||| ||||||||||||||||||||| |||||||| |
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| T |
28926072 |
tttaactcttgacgtttcatcgaagtcgtcacaatcagatcctataaagttgctcacatcagaatcaccagtatcatcttccccctcacctatttcatac |
28926171 |
T |
|
| Q |
340 |
ggttccaagtcaagcttgatgtttccatttttaatgatgtcacgggcaatataaacatcctgagaattccacccttccnnnnnnnngataacttgataat |
439 |
Q |
| |
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|| ||||||||| ||||| | || |||||||||| ||||||||||||||| |||| ||||||||||||| |||||| |||||||||||||| |
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| T |
28926172 |
ggatccaagtcacgcttgtttttcccatttttaacgatgtcacgggcaatgtaaatatcctgagaattcagcccttctctttctttgataacttgataat |
28926271 |
T |
|
| Q |
440 |
attctaaaaagtaactttcaactgtatctggatctctcatatctatcttctcctgcaaatgaaaa |
504 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28926272 |
attctaaaaagtaactttcaactgtatctggatctctcatatctatcttctcctgcaaatgaaaa |
28926336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 13 - 173
Target Start/End: Original strand, 28916613 - 28916773
Alignment:
| Q |
13 |
cagattaccatcttctttttgttggggtcaaaaagctggnnnnnnnggcagtacttatggatgatcgaagcaacatcaatttcggaaaaagctttggtcg |
112 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28916613 |
cagattaccatcttctttttcttggggtcaaaaagctggtttttttggcagtacttatggatgatcgaagcaacatcaatttcggaaaaagctttggtcg |
28916712 |
T |
|
| Q |
113 |
tgtcttcaccaatatttttaagaaaatctatgagacttcttgaaccccatccaacaaaatc |
173 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28916713 |
tgtcttcaccaatatttttaagaaaatctatgagacttcttgaaccccatccaacaaaatc |
28916773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 240 - 504
Target Start/End: Original strand, 28902437 - 28902686
Alignment:
| Q |
240 |
tttaactcttgacgtgccaaccaagtcgtcagaatcagaacctataaagtcacttgcatcagattcaccggtatcatcttccccctcacctctttcatac |
339 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||| |||||| |
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| T |
28902437 |
tttaactcttgacgtgccaaccaagtcatcacaatcagaacctataaagtcactcgcatcagattcaccagtatcgtcttccccctcacctacttcata- |
28902535 |
T |
|
| Q |
340 |
ggttccaagtcaagcttgatgtttccatttttaatgatgtcacgggcaatataaacatcctgagaattccacccttccnnnnnnnngataacttgataat |
439 |
Q |
| |
|
||| | ||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||| |
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|
| T |
28902536 |
--------------tttgttttttccatttttaatgatgtcacgggcagtataaacatcctgagaattcagcccttcttttttcttgataacttgataat |
28902621 |
T |
|
| Q |
440 |
attctaaaaagtaactttcaactgtatctggatctctcatatctatcttctcctgcaaatgaaaa |
504 |
Q |
| |
|
|||| |||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
28902622 |
attcaaaaaagtaactttctattgtatctggatctctcatatctaccttctcctgcaaatgaaaa |
28902686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 11 - 173
Target Start/End: Original strand, 28892245 - 28892407
Alignment:
| Q |
11 |
cacagattaccatcttctttttgttggggtcaaaaagctggnnnnnnnggcagtacttatggatgatcgaagcaacatcaatttcggaaaaagctttggt |
110 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||| |
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|
| T |
28892245 |
cacagattaccttcttctttttcttggggtcaaaaagctggtttttgtggcagtacttactgatgattgaagcaacatcaatttcggaaaaagctttggt |
28892344 |
T |
|
| Q |
111 |
cgtgtcttcaccaatatttttaagaaaatctatgagacttcttgaaccccatccaacaaaatc |
173 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
28892345 |
cgtgtcttcaccaatatttttaagaaaatctacgagacttcttgaaccccatccaacaaaatc |
28892407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 22 - 173
Target Start/End: Original strand, 28925848 - 28925999
Alignment:
| Q |
22 |
atcttctttttgttggggtcaaaaagctggnnnnnnnggcagtacttatggatgatcgaagcaacatcaatttcggaaaaagctttggtcgtgtcttcac |
121 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||| | || || |||||||||||| |||||||||||||||||||||||||||||| || |
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| T |
28925848 |
atcttctttttcttggggtcaaaaagctggtgtttgtggcagtaatcattgacgatcgaagcaacttcaatttcggaaaaagctttggtcgtgtctctac |
28925947 |
T |
|
| Q |
122 |
caatatttttaagaaaatctatgagacttcttgaaccccatccaacaaaatc |
173 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
28925948 |
caatatttttaagaaaatctatgagacttcttgaaccccatcctacaaaatc |
28925999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 11 - 173
Target Start/End: Original strand, 28902199 - 28902361
Alignment:
| Q |
11 |
cacagattaccatcttctttttgttggggtcaaaaagctggnnnnnnnggcagtacttatggatgatcgaagcaacatcaatttcggaaaaagctttggt |
110 |
Q |
| |
|
|||| ||||| ||||||||||| |||||||||||||||||| ||||||||| ||||||| |||||||||||| ||| || || |||| || |
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|
| T |
28902199 |
cacaaattacgatcttctttttcttggggtcaaaaagctggtttgtgtggcagtactggatgatgatccaagcaacatcaagttcagacaacgcttcagt |
28902298 |
T |
|
| Q |
111 |
cgtgtcttcaccaatatttttaagaaaatctatgagacttcttgaaccccatccaacaaaatc |
173 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28902299 |
cgtgtctctaccaatacttttaagaaaatctatgagacttcttgaaccccatccaacaaaatc |
28902361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 76 - 170
Target Start/End: Original strand, 28935507 - 28935601
Alignment:
| Q |
76 |
atcgaagcaacatcaatttcggaaaaagctttggtcgtgtcttcaccaatatttttaagaaaatctatgagacttcttgaaccccatccaacaaa |
170 |
Q |
| |
|
||||||||||||||| ||| | ||| ||||| | ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28935507 |
atcgaagcaacatcatgttccgtaaatgcttttgccgtgtctctaccaatatctttaagaaaatctatgagacttcttgaaccccatccaacaaa |
28935601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 272 - 504
Target Start/End: Original strand, 28892515 - 28892741
Alignment:
| Q |
272 |
aatcagaacctataaagtcacttgcatcagattcaccggtatcatcttccccctcacctctttcatacggttccaagtcaagcttgatgtttccattttt |
371 |
Q |
| |
|
|||||||| |||| |||| ||| ||||||| ||||||||||||||||||||||||||| ||||||| || ||| |||| | |||| |||| | |
|
|
| T |
28892515 |
aatcagaatctatgaagttactgacatcagactcaccggtatcatcttccccctcacctatttcatatgg------atcacacttgttttttctatttat |
28892608 |
T |
|
| Q |
372 |
aatgatgtcacgggcaatataaacatcctgagaattccacccttccnnnnnnnngataacttgataatattctaaaaagtaactttcaactgtatctgga |
471 |
Q |
| |
|
||| | |||||||||| |||||| | |||||||||| |||||| ||||| ||||||||| || |||||||||||||| |||||||||| |
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|
| T |
28892609 |
aatagtatcacgggcaaaataaacttgctgagaattcagcccttcttttttcttgataatttgataataatcaaaaaagtaactttcttgtgtatctgga |
28892708 |
T |
|
| Q |
472 |
tctctcatatctatcttctcctgcaaatgaaaa |
504 |
Q |
| |
|
||| ||||||| | ||| ||||||||||||||| |
|
|
| T |
28892709 |
tctttcatatcgaccttttcctgcaaatgaaaa |
28892741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 446 - 504
Target Start/End: Original strand, 28935823 - 28935881
Alignment:
| Q |
446 |
aaaagtaactttcaactgtatctggatctctcatatctatcttctcctgcaaatgaaaa |
504 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||||||||| ||||| ||||||||| |
|
|
| T |
28935823 |
aaaagtaactttcaaatgtatctggatctttcatatctatcttttcctgaaaatgaaaa |
28935881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 264 - 320
Target Start/End: Original strand, 28935692 - 28935748
Alignment:
| Q |
264 |
gtcgtcagaatcagaacctataaagtcacttgcatcagattcaccggtatcatcttc |
320 |
Q |
| |
|
||||||| |||||||||||||||||| ||| ||||||| ||||| | ||||||||| |
|
|
| T |
28935692 |
gtcgtcacaatcagaacctataaagtaactcacatcagagtcaccagcatcatcttc |
28935748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 281 - 401
Target Start/End: Original strand, 34009511 - 34009631
Alignment:
| Q |
281 |
ctataaagtcacttgcatcagattcaccggtatcatcttccccctcacctctttcatacggttccaagtcaagcttgatgtttccatttttaatgatgtc |
380 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||| || ||||||||| |||| | |||| ||| ||||||||||| |
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|
| T |
34009511 |
ctataaagtcactcacatcagattcaccagtatcatcttccccctcacctacttcatatggatccaagtcacacttgttttttcaattgttaatgatgtc |
34009610 |
T |
|
| Q |
381 |
acgggcaatataaacatcctg |
401 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
34009611 |
acgggcaatataaacatcctg |
34009631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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