View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0833_high_13 (Length: 277)

Name: NF0833_high_13
Description: NF0833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0833_high_13
NF0833_high_13
[»] chr4 (2 HSPs)
chr4 (7-265)||(1007174-1007432)
chr4 (7-260)||(16866245-16866498)
[»] chr3 (3 HSPs)
chr3 (6-265)||(20545209-20545468)
chr3 (179-252)||(50495180-50495253)
chr3 (30-93)||(42971685-42971748)
[»] chr8 (4 HSPs)
chr8 (6-260)||(40609854-40610108)
chr8 (8-132)||(27887979-27888103)
chr8 (8-132)||(27946637-27946761)
chr8 (8-132)||(28026880-28027004)
[»] chr1 (1 HSPs)
chr1 (12-258)||(47144536-47144782)
[»] chr6 (1 HSPs)
chr6 (8-132)||(5144220-5144344)
[»] chr5 (2 HSPs)
chr5 (59-129)||(14178714-14178784)
chr5 (21-132)||(20531922-20532033)
[»] chr7 (1 HSPs)
chr7 (190-258)||(45229852-45229920)


Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 7 - 265
Target Start/End: Original strand, 1007174 - 1007432
Alignment:
Q  7 catgattggtgatagtgcaatagcttggtcatctaaaacgcaacctatagttactctctccactactgaagcagaatatgttgcagcagcttcatgttca 106  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |    
T  1007174 catgattggtgatagtgcaatagcttggtcatctaaaaagcaacctatagttactctcttcactactgaagcagaatatgttgcagcagcttcatgttta 1007273  T
Q  107 tgtcagggaatttggttaagaagaatcctgcaccacttgaatgaggaacataaagaagtaacaacaatatactgtgataatagctcatcaataaagctat 206  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1007274 tgttagggaatttggttaagaagaatcctgcaccacttgaatgaggaacttaaagaagtaacaacaatatactgtgataatagctcatcaataaagctat 1007373  T
Q  207 gtaagaatccagtcatgcatggtagatgcagacatatagatgtcaggtttcactaccta 265  Q
     |||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||    
T  1007374 ctaagaatccaatcatgcatggtagatacaaacatatagatgtcaggtttcactaccta 1007432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 7 - 260
Target Start/End: Original strand, 16866245 - 16866498
Alignment:
Q  7 catgattggtgatagtgcaatagcttggtcatctaaaacgcaacctatagttactctctccactactgaagcagaatatgttgcagcagcttcatgttca 106  Q
    |||||||||||||||||||||||| ||| ||||||||| ||| |||||||||||||| || ||||||||||  |||||||||||||||||||||||||||    
T  16866245 catgattggtgatagtgcaatagcctggccatctaaaaagcagcctatagttactctttctactactgaagttgaatatgttgcagcagcttcatgttca 16866344  T
Q  107 tgtcagggaatttggttaagaagaatcctgcaccacttgaatgaggaacataaagaagtaacaacaatatactgtgataatagctcatcaataaagctat 206  Q
    ||||| ||||||||| ||||||||||||||||||| |||||||| || || || |||||||| ||||| || ||||||||||||||||||||||||||||    
T  16866345 tgtcaaggaatttggctaagaagaatcctgcaccatttgaatgaagatcagaaggaagtaactacaatttattgtgataatagctcatcaataaagctat 16866444  T
Q  207 gtaagaatccagtcatgcatggtagatgcagacatatagatgtcaggtttcact 260  Q
     ||||||||||||||||||||| ||||||| ||| |||||| ||||||||||||    
T  16866445 ctaagaatccagtcatgcatggaagatgcaaacacatagatctcaggtttcact 16866498  T

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Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 6 - 265
Target Start/End: Original strand, 20545209 - 20545468
Alignment:
Q  6 acatgattggtgatagtgcaatagcttggtcatctaaaacgcaacctatagttactctctccactactgaagcagaatatgttgcagcagcttcatgttc 105  Q
    |||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20545209 acatgatttgtgatagtacaatagcttggtcatctaaaaagcaacctatagttactctctccactactgaagcagaatatgttgcagcagcttcatgttc 20545308  T
Q  106 atgtcagggaatttggttaagaagaatcctgcaccacttgaatgaggaacataaagaagtaacaacaatatactgtgataatagctcatcaataaagcta 205  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||| ||| |||||||||||||||||||||    
T  20545309 atgtcagggaatttggttaagaagaatcttgcaccacttgaatgaggaacagaaagaagtatcaacaatatactttgacaatagctcatcaataaagcta 20545408  T
Q  206 tgtaagaatccagtcatgcatggtagatgcagacatatagatgtcaggtttcactaccta 265  Q
    | ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  20545409 tctaagaatccagtcatgcatggtagatgcaaacatatagatgtcaggtttcacttccta 20545468  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 252
Target Start/End: Original strand, 50495180 - 50495253
Alignment:
Q  179 tgtgataatagctcatcaataaagctatgtaagaatccagtcatgcatggtagatgcagacatatagatgtcag 252  Q
    |||||||||| | |||| || ||||| | |||||||||| | |||||||| ||||||| |||||||||||||||    
T  50495180 tgtgataataacacatctattaagctctataagaatccaattatgcatggaagatgcaaacatatagatgtcag 50495253  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 93
Target Start/End: Original strand, 42971685 - 42971748
Alignment:
Q  30 cttggtcatctaaaacgcaacctatagttactctctccactactgaagcagaatatgttgcagc 93  Q
    |||||||||||||||  ||| |||| || ||||| ||||||||||||||||||| ||| |||||    
T  42971685 cttggtcatctaaaaaacaagctattgtaactctgtccactactgaagcagaatttgtagcagc 42971748  T

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Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 6 - 260
Target Start/End: Complemental strand, 40610108 - 40609854
Alignment:
Q  6 acatgattggtgatagtgcaatagcttggtcatctaaaacgcaacctatagttactctctccactactgaagcagaatatgttgcagcagcttcatgttc 105  Q
    ||||||||||||||||||||||| |||||||||||||||  ||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  40610108 acatgattggtgatagtgcaataacttggtcatctaaaaaacaatctatagttactctctccactactgaagcataatatgttgcagcaacttcatgttc 40610009  T
Q  106 atgtcagggaatttggttaagaagaatcctgcaccacttgaatgaggaacataaagaagtaacaacaatatactgtgataatagctcatcaataaagcta 205  Q
    |||||||||||||||| ||||||||||| | ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  40610008 atgtcagggaatttggctaagaagaatcttacaccacttgaatgagcaacagaaagaagtaacaacaatatactgtgataatagctcatcaataaagcta 40609909  T
Q  206 tgtaagaatccagtcatgcatggtagatgcagacatatagatgtcaggtttcact 260  Q
    | ||||||||||||||||||||||||||||| ||||||||||||||  |||||||    
T  40609908 tctaagaatccagtcatgcatggtagatgcaaacatatagatgtcacttttcact 40609854  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 132
Target Start/End: Complemental strand, 27888103 - 27887979
Alignment:
Q  8 atgattggtgatagtgcaatagcttggtcatctaaaacgcaacctatagttactctctccactactgaagcagaatatgttgcagcagcttcatgttcat 107  Q
    |||||||| ||| |||||||| |||||||||| |||| ||| |||||||||||||  ||||| | |||||| ||  ||||||||||||| ||||| || |    
T  27888103 atgattggagatggtgcaatatcttggtcatcaaaaaagcagcctatagttactccttccaccattgaagctgaggatgttgcagcagcgtcatgctctt 27888004  T
Q  108 gtcagggaatttggttaagaagaat 132  Q
    |||| ||||||||| ||||||||||    
T  27888003 gtcaaggaatttggctaagaagaat 27887979  T

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Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 132
Target Start/End: Complemental strand, 27946761 - 27946637
Alignment:
Q  8 atgattggtgatagtgcaatagcttggtcatctaaaacgcaacctatagttactctctccactactgaagcagaatatgttgcagcagcttcatgttcat 107  Q
    |||||||| ||| |||||||| |||||||||| |||| ||| |||||||||||||  ||||| | |||||| ||  ||||||||||||| ||||| || |    
T  27946761 atgattggagatggtgcaatatcttggtcatcaaaaaagcagcctatagttactccttccaccattgaagctgaggatgttgcagcagcgtcatgctctt 27946662  T
Q  108 gtcagggaatttggttaagaagaat 132  Q
    |||| ||||||||| ||||||||||    
T  27946661 gtcaaggaatttggctaagaagaat 27946637  T

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Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 132
Target Start/End: Complemental strand, 28027004 - 28026880
Alignment:
Q  8 atgattggtgatagtgcaatagcttggtcatctaaaacgcaacctatagttactctctccactactgaagcagaatatgttgcagcagcttcatgttcat 107  Q
    |||||||| ||| |||||||| |||||||||| |||| ||| |||||||||||||  ||||| | |||||| ||  ||||||||||||| ||||| || |    
T  28027004 atgattggagatggtgcaatatcttggtcatcaaaaaagcagcctatagttactccttccaccattgaagctgaggatgttgcagcagcgtcatgctctt 28026905  T
Q  108 gtcagggaatttggttaagaagaat 132  Q
    |||| ||||||||| ||||||||||    
T  28026904 gtcaaggaatttggctaagaagaat 28026880  T

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Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 12 - 258
Target Start/End: Original strand, 47144536 - 47144782
Alignment:
Q  12 ttggtgatagtgcaatagcttggtcatctaaaacgcaacctatagttactctctccactactgaagcagaatatgttgcagcagcttcatgttcatgtca 111  Q
    |||||||| | |||||||| ||||||||||||| ||| |||||||||||||| || |||||||||||||| ||| | |||||||||||||| ||||||||    
T  47144536 ttggtgatggagcaatagcctggtcatctaaaaagcagcctatagttactctttctactactgaagcagagtatttagcagcagcttcatgctcatgtca 47144635  T
Q  112 gggaatttggttaagaagaatcctgcaccacttgaatgaggaacataaagaagtaacaacaatatactgtgataatagctcatcaataaagctatgtaag 211  Q
     ||||| ||| | ||||||||| |||| ||  | ||||| ||||| ||   || ||| |  || || ||||| |||||||||||||||||||||| ||||    
T  47144636 aggaatctggattagaagaatcttgcatcatcttaatgaagaacagaagagagcaacgatcatctagtgtgacaatagctcatcaataaagctatctaag 47144735  T
Q  212 aatccagtcatgcatggtagatgcagacatatagatgtcaggtttca 258  Q
    |||||||| |||||||| |||||||  ||||||||||| ||||||||    
T  47144736 aatccagttatgcatgggagatgcaagcatatagatgtgaggtttca 47144782  T

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Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 132
Target Start/End: Complemental strand, 5144344 - 5144220
Alignment:
Q  8 atgattggtgatagtgcaatagcttggtcatctaaaacgcaacctatagttactctctccactactgaagcagaatatgttgcagcagcttcatgttcat 107  Q
    ||||| || ||| |||||||||||| ||||||||| | ||| |||||||||||||| ||||| ||||| |  || |||||||||| ||||||||| || |    
T  5144344 atgatcggggatggtgcaatagctttgtcatctaagaagcagcctatagttactctttccaccactgaggttgagtatgttgcagtagcttcatgctctt 5144245  T
Q  108 gtcagggaatttggttaagaagaat 132  Q
    |||| ||||||||| ||||||||||    
T  5144244 gtcaaggaatttggctaagaagaat 5144220  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 129
Target Start/End: Original strand, 14178714 - 14178784
Alignment:
Q  59 actctctccactactgaagcagaatatgttgcagcagcttcatgttcatgtcagggaatttggttaagaag 129  Q
    ||||| || ||||||||||| |||| ||||||||||||||| || |||||| |||| ||||||||||||||    
T  14178714 actctttctactactgaagctgaatttgttgcagcagcttcttgctcatgttagggcatttggttaagaag 14178784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 132
Target Start/End: Original strand, 20531922 - 20532033
Alignment:
Q  21 gtgcaatagcttggtcatctaaaacgcaacctatagttactctctccactactgaagcagaatatgttgcagcagcttcatgttcatgtcagggaatttg 120  Q
    |||||||| ||||||||||||| | ||||| ||| |||||| | |||||||| ||| |  |  ||||||||| ||||||||| || ||||| ||  ||||    
T  20531922 gtgcaatatcttggtcatctaagaagcaacttattgttactttttccactaccgaaactaagaatgttgcagtagcttcatgctcttgtcaaggggtttg 20532021  T
Q  121 gttaagaagaat 132  Q
    | ||||||||||    
T  20532022 gctaagaagaat 20532033  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 258
Target Start/End: Complemental strand, 45229920 - 45229852
Alignment:
Q  190 ctcatcaataaagctatgtaagaatccagtcatgcatggtagatgcagacatatagatgtcaggtttca 258  Q
    ||||||||| ||| | | |||||||||||| |||||||| |||||||  || ||||||||| |||||||    
T  45229920 ctcatcaattaagttgtctaagaatccagttatgcatggaagatgcaagcacatagatgtctggtttca 45229852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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