View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0833_high_16 (Length: 242)
Name: NF0833_high_16
Description: NF0833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0833_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 36926259 - 36926024
Alignment:
| Q |
1 |
ttccaccaaaattgaagttccgagtctttcttgatcgagtcctcatccttgtagtaaatggagcagtagtctttaacccatgtcttgatggcaaaccaaa |
100 |
Q |
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||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36926259 |
ttccaccaagattgaagttccgagtctttcttgattgagtcctcatccttgtagtaaatggagcagtagtctttaacccatgtcttgatggcaaaccaaa |
36926160 |
T |
|
| Q |
101 |
tctccagtccatcaactgcataagggtaatcctcgattaataatcgaagaccgtatggcgaagttgagtccttaacagccattcctctgaaatttgaaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36926159 |
tctccagtccatcaactgcataagggtaatcctcgattaataatcgaagaccgtatggcgaagttgagtccttaacagccattcctctgaaatttgaaga |
36926060 |
T |
|
| Q |
201 |
ggtgaagcaattgatcaacaccaatattcatctcac |
236 |
Q |
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||||||||||||||||||||||||||||||| |||| |
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| T |
36926059 |
ggtgaagcaattgatcaacaccaatattcatttcac |
36926024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 46709332 - 46709523
Alignment:
| Q |
1 |
ttccaccaaaattgaagttccgagtctttcttgatcgagtcctcatccttgtagtaaatggagcagtagtctttaacccatgtcttgatggcaaaccaaa |
100 |
Q |
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||||||||| |||| ||||| | |||||||| | || ||| |||| ||||||||||| ||| |||||||| | ||||||||| ||||| |||||||||| |
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| T |
46709332 |
ttccaccaagattgtagttctgcatctttctttaccgtgtcatcattcttgtagtaaaaggaacagtagtcctgaacccatgtgttgattgcaaaccaaa |
46709431 |
T |
|
| Q |
101 |
tctccagtccatcaactgcataagggtaatcctcgattaataatcgaagaccgtatggcgaagttgagtccttaacagccattcctctgaaa |
192 |
Q |
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| T |
46709432 |
tctctagcccgtccaccgcgtaagggtaatcgttgactattagtcgaaggccatgcggagaagctgaatctttaattgccattcctctgaaa |
46709523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 134
Target Start/End: Original strand, 6262441 - 6262522
Alignment:
| Q |
53 |
agtaaatggagcagtagtctttaacccatgtcttgatggcaaaccaaatctccagtccatcaactgcataagggtaatcctc |
134 |
Q |
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|||| |||||| |||||||| ||||||||||| || ||| |||||| || ||||||||||| ||||||||||||||||| |
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| T |
6262441 |
agtatatggagacgtagtcttgtacccatgtcttaatagcatcccaaatgtcaagtccatcaacagcataagggtaatcctc |
6262522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 137
Target Start/End: Complemental strand, 9606114 - 9606044
Alignment:
| Q |
67 |
tagtctttaacccatgtcttgatggcaaaccaaatctccagtccatcaactgcataagggtaatcctcgat |
137 |
Q |
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| T |
9606114 |
tagtcttggacccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgat |
9606044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 49608531 - 49608567
Alignment:
| Q |
65 |
agtagtctttaacccatgtcttgatggcaaaccaaat |
101 |
Q |
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||||||| | ||||||||||||||||||||||||||| |
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| T |
49608531 |
agtagtcctcaacccatgtcttgatggcaaaccaaat |
49608567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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