View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0833_high_3 (Length: 423)
Name: NF0833_high_3
Description: NF0833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0833_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 123; Significance: 5e-63; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 291 - 417
Target Start/End: Complemental strand, 40406123 - 40405997
Alignment:
| Q |
291 |
caacaacatgttcaatggcaccctccctcaagaactctctaacctcttcaatcttcaagttcttgacctctacaacaacaacatgaccggttcacttcct |
390 |
Q |
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| T |
40406123 |
caacaacatcttcaatggcaccctccctcaagaactctctaacctcttcaatcttcaagttcttgacctctacaacaacaacatgaccggttcacttcct |
40406024 |
T |
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| Q |
391 |
gtttcggtcacccatctttcttttctc |
417 |
Q |
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| T |
40406023 |
gtttcggtcacccatctttcttttctc |
40405997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 19 - 138
Target Start/End: Complemental strand, 40406395 - 40406276
Alignment:
| Q |
19 |
ctcctctccttcaaatcctccataacaaacgacccacaaaacatcctcacctcatggaacccaaaaaccccttactgttcctggtacggcatcaaatgtt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
40406395 |
ctcctctccttcaaatcctccataacaaacgacccacaaaacatcctcacctcatggaacccaaaaaccccttactgttcctggtacggcattaaatgtt |
40406296 |
T |
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| Q |
119 |
cccaacatcgccacgtcatt |
138 |
Q |
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| T |
40406295 |
cccaacatcgccacgtcatt |
40406276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 245
Target Start/End: Complemental strand, 40406197 - 40406169
Alignment:
| Q |
217 |
gccgacaacaaattctccggcccaatacc |
245 |
Q |
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| T |
40406197 |
gccgacaacaaattctccggcccaatacc |
40406169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 347 - 380
Target Start/End: Original strand, 4977241 - 4977274
Alignment:
| Q |
347 |
aagttcttgacctctacaacaacaacatgaccgg |
380 |
Q |
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|||||||||| ||||||||||||||||||||||| |
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| T |
4977241 |
aagttcttgatctctacaacaacaacatgaccgg |
4977274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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