View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0833_low_1 (Length: 516)
Name: NF0833_low_1
Description: NF0833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0833_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 487
Target Start/End: Complemental strand, 34947709 - 34947227
Alignment:
| Q |
1 |
taattaatttgcaaccagcttaattatatgtatgaatgaaattagtaataacatcattagcatcagtctagcataatttgtaattttattgtggtatttt |
100 |
Q |
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| T |
34947709 |
taattaatttgcaaccagcttaattatatgtatgagtgaaattagtaataacatcattagcattagtctagcataatttgtaattttattgtggtatttt |
34947610 |
T |
|
| Q |
101 |
tt-ccctcaagcatgatttttgtaagaaatcttcctcaaacaaagaagcatatgcaattcttagtnnnnnnnnnnngt--------gcctgcaacactta |
191 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
34947609 |
tttccctcaagcatgatttttgtaagaaatcttcctcaaacaaagaagcatatgcaattcttagtaaaaaaaaaaaaaaaaaaaaggccagcaacactta |
34947510 |
T |
|
| Q |
192 |
ttctaactctaacactccattttcaatgttacacctcttattgaatgaaattggtatatctttagacttggtttggtaacgttgatt-cagactttagat |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||| |
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| T |
34947509 |
ttctaactctaacactccattttcaatgttacacctcttattgaatgaaattggtatatctttaaacttggtttggtaacgttggtttcagactttagat |
34947410 |
T |
|
| Q |
291 |
ttgatctgttgatattgacttaaggctttggagtatgaacattttaaaatctcatattcgattcatctctatattaattttagtaggacaatttaacttc |
390 |
Q |
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||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |
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| T |
34947409 |
ttgatctgttggtattgacttaaagctttggagtatgaacattttaaaatctcatagtcgattcatctccatattaattttagtaggacaatttaacttc |
34947310 |
T |
|
| Q |
391 |
tttnnnnnnnnnnnnnnnnnnnngagttaggagcgattttcttcctatgtgagataagattggcatttatagcacgtgccaaagtctatgatatttt |
487 |
Q |
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||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
34947309 |
ttt-------------aaaaaaagagttaggagcgattttctttctatgtgagataagattggcatttatagcacgtgcc-aagtctatgatatttt |
34947227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 344 - 392
Target Start/End: Complemental strand, 23942573 - 23942525
Alignment:
| Q |
344 |
atattcgattcatctctatattaattttagtaggacaatttaacttctt |
392 |
Q |
| |
|
||||||||||| |||||||| |||||||||||| ||||||||||||| |
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|
| T |
23942573 |
atattcgattctcctctatatcaattttagtaggttaatttaacttctt |
23942525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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