View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0833_low_12 (Length: 318)

Name: NF0833_low_12
Description: NF0833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0833_low_12
NF0833_low_12
[»] chr1 (1 HSPs)
chr1 (1-213)||(36926235-36926447)
[»] chr3 (2 HSPs)
chr3 (111-190)||(49608382-49608461)
chr3 (35-85)||(49608458-49608508)
[»] chr8 (6 HSPs)
chr8 (36-181)||(6262233-6262378)
chr8 (40-181)||(6456147-6456288)
chr8 (123-181)||(6362116-6362174)
chr8 (100-181)||(6330783-6330864)
chr8 (121-181)||(6351231-6351291)
chr8 (121-181)||(6423148-6423208)
[»] chr7 (1 HSPs)
chr7 (6-172)||(46709185-46709351)
[»] chr2 (2 HSPs)
chr2 (11-79)||(44000209-44000277)
chr2 (110-170)||(42692170-42692230)


Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 36926235 - 36926447
Alignment:
Q  1 actcggaacttcaattttggtggaaggaaataagggaagagggtcatggtgacaagaaagatgagccttggtggccaaagatgcatactctcaaagatct 100  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||    
T  36926235 actcggaacttcaatcttggtggaaggaaataagggaagagggtcatggtgacaagaaagatgagccttggtggccaaagatgcatactctcgaagagct 36926334  T
Q  101 gattgaaacttgcactattattatatggattgcttcagctctccatgctgcagtcaactttggacagtatccatatggaggctatccaccgagtcgtcct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36926335 gattgaaacttgcactattattatatggattgcttcagctctccatgctgcagtcaactttggacagtatccatatggaggctatccaccgagtcgtcct 36926434  T
Q  201 tctatgagccgac 213  Q
    |||||||||||||    
T  36926435 tctatgagccgac 36926447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 111 - 190
Target Start/End: Complemental strand, 49608461 - 49608382
Alignment:
Q  111 tgcactattattatatggattgcttcagctctccatgctgcagtcaactttggacagtatccatatggaggctatccacc 190  Q
    ||||||||||||||||||||||||||| ||||||||| ||  |||||||||||||| |||||||||||||||||||||||    
T  49608461 tgcactattattatatggattgcttcaactctccatgttgttgtcaactttggacattatccatatggaggctatccacc 49608382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 35 - 85
Target Start/End: Complemental strand, 49608508 - 49608458
Alignment:
Q  35 ggaagagggtcatggtgacaagaaagatgagccttggtggccaaagatgca 85  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  49608508 ggaagaggatcatggtgacaagaaagatgagccttggtggccaaagatgca 49608458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 36 - 181
Target Start/End: Complemental strand, 6262378 - 6262233
Alignment:
Q  36 gaagagggtcatggtgacaagaaagatgagccttggtggccaaagatgcatactctcaaagatctgattgaaacttgcactattattatatggattgctt 135  Q
    |||| ||||||||||||||||||||| ||||| |||||||| || ||||| |||| | ||||  ||||| ||  ||||| |||||| ||||||| |||||    
T  6262378 gaagtgggtcatggtgacaagaaagacgagccatggtggccgaaaatgcaaactcgcgaagagttgattcaagtttgcagtattatcatatggactgctt 6262279  T
Q  136 cagctctccatgctgcagtcaactttggacagtatccatatggagg 181  Q
    ||||||| ||||| || || || |||||||| ||||| ||||||||    
T  6262278 cagctcttcatgcagctgttaattttggacaatatccgtatggagg 6262233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 40 - 181
Target Start/End: Complemental strand, 6456288 - 6456147
Alignment:
Q  40 agggtcatggtgacaagaaagatgagccttggtggccaaagatgcatactctcaaagatctgattgaaacttgcactattattatatggattgcttcagc 139  Q
    ||||||||||||||  ||||||  |||| |||||||| |||||||| ||| |   |||  || || || ||||| | ||||| ||||||| |||||||||    
T  6456288 agggtcatggtgacttgaaagacaagccatggtggcctaagatgcaaactgttggagacttggttcaatcttgctccattatcatatggactgcttcagc 6456189  T
Q  140 tctccatgctgcagtcaactttggacagtatccatatggagg 181  Q
    ||| ||||| ||||| ||||||||||||||||| ||||||||    
T  6456188 tcttcatgcagcagttaactttggacagtatccttatggagg 6456147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 181
Target Start/End: Complemental strand, 6362174 - 6362116
Alignment:
Q  123 atatggattgcttcagctctccatgctgcagtcaactttggacagtatccatatggagg 181  Q
    ||||||||||||||||| || ||||| ||||| || |||||||| ||||| ||||||||    
T  6362174 atatggattgcttcagcacttcatgcagcagttaattttggacaatatccgtatggagg 6362116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 181
Target Start/End: Complemental strand, 6330864 - 6330783
Alignment:
Q  100 tgattgaaacttgcactattattatatggattgcttcagctctccatgctgcagtcaactttggacagtatccatatggagg 181  Q
    |||||||| ||||||||||  | ||||||||||||||||| |  ||||| || || || ||||| || ||||||||||||||    
T  6330864 tgattgaagcttgcactatcctcatatggattgcttcagcacatcatgcagctgttaattttggtcaatatccatatggagg 6330783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 181
Target Start/End: Complemental strand, 6351291 - 6351231
Alignment:
Q  121 ttatatggattgcttcagctctccatgctgcagtcaactttggacagtatccatatggagg 181  Q
    ||||||||||||||||||| || ||||| || || || || ||||| ||||||||||||||    
T  6351291 ttatatggattgcttcagcacttcatgcagctgttaatttcggacaatatccatatggagg 6351231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 181
Target Start/End: Complemental strand, 6423208 - 6423148
Alignment:
Q  121 ttatatggattgcttcagctctccatgctgcagtcaactttggacagtatccatatggagg 181  Q
    ||||||||||||||||||| || ||||| || || || |||||||| || |||||||||||    
T  6423208 ttatatggattgcttcagcacttcatgcagctgttaattttggacaatacccatatggagg 6423148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 6 - 172
Target Start/End: Complemental strand, 46709351 - 46709185
Alignment:
Q  6 gaacttcaattttggtggaaggaaataagggaagagggtcatggtgacaagaaagatgagccttggtggccaaagatgcatactctcaaagatctgattg 105  Q
    ||||| |||| ||||||||||||| | |   |||| ||||| || ||||||||| | ||||||||||||||||||||||| ||  |  ||||  |||  |    
T  46709351 gaactacaatcttggtggaaggaattgatacaagaaggtcacggcgacaagaaaaacgagccttggtggccaaagatgcaaacagtggaagagttgacgg 46709252  T
Q  106 aaacttgcactattattatatggattgcttcagctctccatgctgcagtcaactttggacagtatcc 172  Q
    |||| ||||| || ||||||||||||||||||||||| ||||| || || ||||||||||| |||||    
T  46709251 aaacatgcacaatcattatatggattgcttcagctctacatgcagctgtaaactttggacaatatcc 46709185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 44000277 - 44000209
Alignment:
Q  11 tcaattttggtggaaggaaataagggaagagggtcatggtgacaagaaagatgagccttggtggccaaa 79  Q
    ||||| |||||||||||||||||| ||| | ||||| |||||||||||| ||||||| |||||||||||    
T  44000277 tcaatcttggtggaaggaaataagagaaaatggtcacggtgacaagaaatatgagccatggtggccaaa 44000209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 170
Target Start/End: Complemental strand, 42692230 - 42692170
Alignment:
Q  110 ttgcactattattatatggattgcttcagctctccatgctgcagtcaactttggacagtat 170  Q
    |||||||| | | |||||||||||||||||||| ||||| || || || ||||||||||||    
T  42692230 ttgcactactgtcatatggattgcttcagctcttcatgcagctgttaattttggacagtat 42692170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1931 times since January 2019
Visitors: 6151