View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0833_low_17 (Length: 286)
Name: NF0833_low_17
Description: NF0833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0833_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 5 - 258
Target Start/End: Original strand, 4878078 - 4878331
Alignment:
| Q |
5 |
tgtcgaagaatatctactaaatgatagttgagttgtgatgagttaagtttataaatagtttgttgacatttcatagttttacttgatataggctccaaaa |
104 |
Q |
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| T |
4878078 |
tgtcgaatactatctactaaatgatagttgagttgtgatgagttaagtttataaatagtttgttgacatttcatagttttacttgatataggctccaaaa |
4878177 |
T |
|
| Q |
105 |
attggaatgtattatcaccctcatactgtgttaaaacatcaaaattgacataaaaccaataaaccattagtttaaatggtgaaatctattacaacagata |
204 |
Q |
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| T |
4878178 |
attggaatggattatcaccctcatactgtgttaaaacatcaaaattgacataaaaccaataaaccattagtttaaatggtgaaatctattacaacagata |
4878277 |
T |
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| Q |
205 |
gtgcagaaatttaattttggtatagagctacttgaaaagaaatctaaacattat |
258 |
Q |
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| T |
4878278 |
gtgcagaaatttaattttggtatagagctacttgaaaagaaatctaaacattat |
4878331 |
T |
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