View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0833_low_18 (Length: 280)
Name: NF0833_low_18
Description: NF0833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0833_low_18 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 133; Significance: 3e-69; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 3 - 135
Target Start/End: Original strand, 37030789 - 37030921
Alignment:
| Q |
3 |
cttggtccaagccgctttcttcttagccaactcagaattagcttgagccacttcagcctctctttgattctcaaaaactttcacttcagtcctcacttta |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37030789 |
cttggtccaagccgctttcttcttagccaactcagaattagcttgagccacttcagcctctctttgattctcaaaaactttcacttcagtcctcacttta |
37030888 |
T |
|
| Q |
103 |
attccctccttctcaccctctccagctctctgc |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
37030889 |
attccctccttctcaccctctccagctctctgc |
37030921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 7 - 135
Target Start/End: Complemental strand, 32592531 - 32592403
Alignment:
| Q |
7 |
gtccaagccgctttcttcttagccaactcagaattagcttgagccacttcagcctctctttgattctcaaaaactttcacttcagtcctcactttaattc |
106 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||| || |
|
|
| T |
32592531 |
gtccaagccgctttcttcttcgccaactcagaattagactcagccacttcagcctctctttgattctcaaaaaccttcacttcagtcctaactctaaatc |
32592432 |
T |
|
| Q |
107 |
cctccttctcaccctctccagctctctgc |
135 |
Q |
| |
|
||||||| |||| ||||||||| |||||| |
|
|
| T |
32592431 |
cctccttgtcactctctccagccctctgc |
32592403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 37 - 135
Target Start/End: Original strand, 31527430 - 31527528
Alignment:
| Q |
37 |
gaattagcttgagccacttcagcctctctttgattctcaaaaactttcacttcagtcctcactttaattccctccttctcaccctctccagctctctgc |
135 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||| ||||||||| |||| ||||||||| |||||| |
|
|
| T |
31527430 |
gaattagcctcagccacttcagcctctctttgattctcaaaaaccttcacttcagtcctaactctaaatccctccttgtcactctctccagccctctgc |
31527528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 55 - 135
Target Start/End: Original strand, 51824851 - 51824931
Alignment:
| Q |
55 |
tcagcctctctttgattctcaaaaactttcacttcagtcctcactttaattccctccttctcaccctctccagctctctgc |
135 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| ||| ||| ||||||||| | || ||||||||| |||||| |
|
|
| T |
51824851 |
tcagcctctctttgattctcaaaaaccttcacttcagtcctaactctaaatccctccttgttactctctccagccctctgc |
51824931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 129; Significance: 8e-67; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 3 - 135
Target Start/End: Original strand, 49188278 - 49188410
Alignment:
| Q |
3 |
cttggtccaagccgctttcttcttagccaactcagaattagcttgagccacttcagcctctctttgattctcaaaaactttcacttcagtcctcacttta |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
49188278 |
cttggtccaagccgctttcttcttagccaactcagaattagcttgagccacttcagcctctctttgattctcaaaaaccttcacttcagtcctcacttta |
49188377 |
T |
|
| Q |
103 |
attccctccttctcaccctctccagctctctgc |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
49188378 |
attccctccttctcaccctctccagctctctgc |
49188410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 7 - 135
Target Start/End: Original strand, 49208295 - 49208423
Alignment:
| Q |
7 |
gtccaagccgctttcttcttagccaactcagaattagcttgagccacttcagcctctctttgattctcaaaaactttcacttcagtcctcactttaattc |
106 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49208295 |
gtccaagcagctttcttcttagccaactcggaattagcctcagccacttcagcctctctttgattctcaaaaactttcacttcagtcctcactttaattc |
49208394 |
T |
|
| Q |
107 |
cctccttctcaccctctccagctctctgc |
135 |
Q |
| |
|
||| |||||||| |||||||| |||||| |
|
|
| T |
49208395 |
cctgtttctcaccttctccagccctctgc |
49208423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 7 - 135
Target Start/End: Original strand, 49192018 - 49192146
Alignment:
| Q |
7 |
gtccaagccgctttcttcttagccaactcagaattagcttgagccacttcagcctctctttgattctcaaaaactttcacttcagtcctcactttaattc |
106 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| | |||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
49192018 |
gtccaagccgctttcttcttagccaattcagaattagcctcagccacttcagcttctctctgattctcaaaaaccttcacttcagtcctcactttaattc |
49192117 |
T |
|
| Q |
107 |
cctccttctcaccctctccagctctctgc |
135 |
Q |
| |
|
||||||| || ||||||||||| |||||| |
|
|
| T |
49192118 |
cctccttgtcgccctctccagccctctgc |
49192146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 7 - 121
Target Start/End: Original strand, 49203124 - 49203238
Alignment:
| Q |
7 |
gtccaagccgctttcttcttagccaactcagaattagcttgagccacttcagcctctctttgattctcaaaaactttcacttcagtcctcactttaattc |
106 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||| | |||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
49203124 |
gtccaagctgccttcttcttagccaactcagaattagcctcagccacctcagcctctctctgattctcaaaaaccttcacttcagtcctcactttaattc |
49203223 |
T |
|
| Q |
107 |
cctccttctcaccct |
121 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
49203224 |
cctccttgtcaccct |
49203238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 3 - 118
Target Start/End: Original strand, 49213131 - 49213246
Alignment:
| Q |
3 |
cttggtccaagccgctttcttcttagccaactcagaattagcttgagccacttcagcctctctttgattctcaaaaactttcacttcagtcctcacttta |
102 |
Q |
| |
|
|||||||||||| || ||||| || |||||||| |||||||| | |||||||||||||||||| ||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
49213131 |
cttggtccaagcagccttctttttggccaactccgaattagcctcagccacttcagcctctctctgattctcaaatactttcacttcagttctcacttta |
49213230 |
T |
|
| Q |
103 |
attccctccttctcac |
118 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
49213231 |
attccctgcttctcac |
49213246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 7 - 135
Target Start/End: Original strand, 26756661 - 26756789
Alignment:
| Q |
7 |
gtccaagccgctttcttcttagccaactcagaattagcttgagccacttcagcctctctttgattctcaaaaactttcacttcagtcctcactttaattc |
106 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||||| | ||||| ||||||||||| | |||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
26756661 |
gtccaagccgctttcttcttagtcaactcggaattagcctcggccacctcagcctctctcttattctcaaaaaccttcacttcagtcctaactttaattt |
26756760 |
T |
|
| Q |
107 |
cctccttctcaccctctccagctctctgc |
135 |
Q |
| |
|
| ||||||||| |||||||||| |||||| |
|
|
| T |
26756761 |
cttccttctcagcctctccagccctctgc |
26756789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2940 times since January 2019
Visitors: 6168