View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0833_low_22 (Length: 242)
Name: NF0833_low_22
Description: NF0833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0833_low_22 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 20 - 242
Target Start/End: Complemental strand, 32592647 - 32592425
Alignment:
| Q |
20 |
ctttaagcttctcagtagtagtcaaagcattcatcctctcaacctcaccttgcaactcagcttcccttagagccacagctttagcggcctcgacttcagc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
32592647 |
ctttaagcttctcagtagtagtcaaagcattcatcctctcaacctcaccctgcaactcagcttcccttagagccacagctttagcagcttcgacttcagc |
32592548 |
T |
|
| Q |
120 |
cacttgagcggccttagtccaagccgctttcttcttcgccaactcagcattagcctcagccacttcagcctctctttgattctcaaaaaccttcacttca |
219 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32592547 |
cacttgagccgccttagtccaagccgctttcttcttcgccaactcagaattagactcagccacttcagcctctctttgattctcaaaaaccttcacttca |
32592448 |
T |
|
| Q |
220 |
gtcctgactctaaatccctcctt |
242 |
Q |
| |
|
||||| ||||||||||||||||| |
|
|
| T |
32592447 |
gtcctaactctaaatccctcctt |
32592425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 20 - 242
Target Start/End: Original strand, 37030677 - 37030899
Alignment:
| Q |
20 |
ctttaagcttctcagtagtagtcaaagcattcatcctctcaacctcaccttgcaactcagcttcccttagagccacagctttagcggcctcgacttcagc |
119 |
Q |
| |
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|||||||||| |||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| |||||| || |||||||||||||| |
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| T |
37030677 |
ctttaagcttttcagtagtagtcaatgcattcatcctctcaacttcaccttgtaactcagcttcccttagtttcacagccttcttcgcctcgacttcagc |
37030776 |
T |
|
| Q |
120 |
cacttgagcggccttagtccaagccgctttcttcttcgccaactcagcattagcctcagccacttcagcctctctttgattctcaaaaaccttcacttca |
219 |
Q |
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||| ||||| ||||| |||||||||||||||||||| |||||||||| |||||| | ||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
37030777 |
cacctgagccgccttggtccaagccgctttcttcttagccaactcagaattagcttgagccacttcagcctctctttgattctcaaaaactttcacttca |
37030876 |
T |
|
| Q |
220 |
gtcctgactctaaatccctcctt |
242 |
Q |
| |
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||||| ||| ||| ||||||||| |
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|
| T |
37030877 |
gtcctcactttaattccctcctt |
37030899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 41 - 242
Target Start/End: Original strand, 51824717 - 51824909
Alignment:
| Q |
41 |
tcaaagcattcatcctctcaacctcaccttgcaactcagcttcccttagagccacagctttagcggcctcgacttcagccacttgagcggccttagtcca |
140 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||| ||||| |||| |||||||||||| ||||||||||| |
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| T |
51824717 |
tcaaagcattcatcttctcaacctcaccttgcaactcagcttcccttagaaccacagatttagcagcctcaacttgagccacttgagcagccttagtcca |
51824816 |
T |
|
| Q |
141 |
agccgctttcttcttcgccaactcagcattagcctcagccacttcagcctctctttgattctcaaaaaccttcacttcagtcctgactctaaatccctcc |
240 |
Q |
| |
|
||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
51824817 |
agccgctttcttcatcgccaactcagagttagcc---------tcagcctctctttgattctcaaaaaccttcacttcagtcctaactctaaatccctcc |
51824907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 20 - 113
Target Start/End: Original strand, 31527319 - 31527412
Alignment:
| Q |
20 |
ctttaagcttctcagtagtagtcaaagcattcatcctctcaacctcaccttgcaactcagcttcccttagagccacagctttagcggcctcgac |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
31527319 |
ctttaagcttctcagtagtagtcaaagcattcatcctctcaacctcaccctgcaactcagcttcccttagagccacagctttagcagcctcgac |
31527412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 168 - 242
Target Start/End: Original strand, 31527432 - 31527506
Alignment:
| Q |
168 |
attagcctcagccacttcagcctctctttgattctcaaaaaccttcacttcagtcctgactctaaatccctcctt |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
31527432 |
attagcctcagccacttcagcctctctttgattctcaaaaaccttcacttcagtcctaactctaaatccctcctt |
31527506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 20 - 238
Target Start/End: Original strand, 49208179 - 49208397
Alignment:
| Q |
20 |
ctttaagcttctcagtagtagtcaaagcattcatcctctcaacctcaccttgcaactcagcttcccttagagccacagctttagcggcctcgacttcagc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| | ||||| |
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| T |
49208179 |
ctttaagcttctcagtagtagtcaaagcattcatcctctcaacctcaccttgcaactcagcttcccttagagccacggctttagcagcctcaagctcagc |
49208278 |
T |
|
| Q |
120 |
cacttgagcggccttagtccaagccgctttcttcttcgccaactcagcattagcctcagccacttcagcctctctttgattctcaaaaaccttcacttca |
219 |
Q |
| |
|
||||||||| ||| | |||||||| ||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
49208279 |
cacttgagccgccattgtccaagcagctttcttcttagccaactcggaattagcctcagccacttcagcctctctttgattctcaaaaactttcacttca |
49208378 |
T |
|
| Q |
220 |
gtcctgactctaaatccct |
238 |
Q |
| |
|
||||| ||| ||| ||||| |
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| T |
49208379 |
gtcctcactttaattccct |
49208397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 20 - 242
Target Start/End: Original strand, 49191902 - 49192124
Alignment:
| Q |
20 |
ctttaagcttctcagtagtagtcaaagcattcatcctctcaacctcaccttgcaactcagcttcccttagagccacagctttagcggcctcgacttcagc |
119 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||| ||||||||||| || ||||| || ||||| ||||| || |
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|
| T |
49191902 |
ctttaagcttctcagttgtagtcaaagcattcatcctctcaacttcaccttgtaactcagcatcccttagagcgacggctttggcagcctcaacttcggc |
49192001 |
T |
|
| Q |
120 |
cacttgagcggccttagtccaagccgctttcttcttcgccaactcagcattagcctcagccacttcagcctctctttgattctcaaaaaccttcacttca |
219 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
49192002 |
cacttgagccgccttagtccaagccgctttcttcttagccaattcagaattagcctcagccacttcagcttctctctgattctcaaaaaccttcacttca |
49192101 |
T |
|
| Q |
220 |
gtcctgactctaaatccctcctt |
242 |
Q |
| |
|
||||| ||| ||| ||||||||| |
|
|
| T |
49192102 |
gtcctcactttaattccctcctt |
49192124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 20 - 242
Target Start/End: Original strand, 49188166 - 49188388
Alignment:
| Q |
20 |
ctttaagcttctcagtagtagtcaaagcattcatcctctcaacctcaccttgcaactcagcttcccttagagccacagctttagcggcctcgacttcagc |
119 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||| || ||||||||||||||||||||||||||||| ||||| || |||||||||||||| |
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| T |
49188166 |
ctttaagcttctcagttgtagtcaatgcattcatcctctcgacttcaccttgcaactcagcttcccttagagcaacagccttcttcgcctcgacttcagc |
49188265 |
T |
|
| Q |
120 |
cacttgagcggccttagtccaagccgctttcttcttcgccaactcagcattagcctcagccacttcagcctctctttgattctcaaaaaccttcacttca |
219 |
Q |
| |
|
||| ||||| ||||| |||||||||||||||||||| |||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49188266 |
cacctgagccgccttggtccaagccgctttcttcttagccaactcagaattagcttgagccacttcagcctctctttgattctcaaaaaccttcacttca |
49188365 |
T |
|
| Q |
220 |
gtcctgactctaaatccctcctt |
242 |
Q |
| |
|
||||| ||| ||| ||||||||| |
|
|
| T |
49188366 |
gtcctcactttaattccctcctt |
49188388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 20 - 242
Target Start/End: Original strand, 49203008 - 49203230
Alignment:
| Q |
20 |
ctttaagcttctcagtagtagtcaaagcattcatcctctcaacctcaccttgcaactcagcttcccttagagccacagctttagcggcctcgacttcagc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| |||||||||||||| || || ||||| |||||||| |
|
|
| T |
49203008 |
ctttaagcttctcagtagtagtcaaagcattcatcctttcaacttcaccttgtaactcagcatcccttagagccacggccttcttcgcctcaacttcagc |
49203107 |
T |
|
| Q |
120 |
cacttgagcggccttagtccaagccgctttcttcttcgccaactcagcattagcctcagccacttcagcctctctttgattctcaaaaaccttcacttca |
219 |
Q |
| |
|
||| ||||| |||||||||||||| || |||||||| |||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
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|
| T |
49203108 |
cacctgagccgccttagtccaagctgccttcttcttagccaactcagaattagcctcagccacctcagcctctctctgattctcaaaaaccttcacttca |
49203207 |
T |
|
| Q |
220 |
gtcctgactctaaatccctcctt |
242 |
Q |
| |
|
||||| ||| ||| ||||||||| |
|
|
| T |
49203208 |
gtcctcactttaattccctcctt |
49203230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 20 - 238
Target Start/End: Original strand, 49213019 - 49213237
Alignment:
| Q |
20 |
ctttaagcttctcagtagtagtcaaagcattcatcctctcaacctcaccttgcaactcagcttcccttagagccacagctttagcggcctcgacttcagc |
119 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||| |
|
|
| T |
49213019 |
ctttaagcttctcagttgtagtcaaagcattcatcttctcaacctcaccttgcaactcagcttcccttagagccacagccttcttcgcctcaacttcagc |
49213118 |
T |
|
| Q |
120 |
cacttgagcggccttagtccaagccgctttcttcttcgccaactcagcattagcctcagccacttcagcctctctttgattctcaaaaaccttcacttca |
219 |
Q |
| |
|
||| ||||| ||||| |||||||| || ||||| || |||||||| | ||||||||||||||||||||||||||| ||||||||||| || ||||||||| |
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|
| T |
49213119 |
cacctgagccgccttggtccaagcagccttctttttggccaactccgaattagcctcagccacttcagcctctctctgattctcaaatactttcacttca |
49213218 |
T |
|
| Q |
220 |
gtcctgactctaaatccct |
238 |
Q |
| |
|
|| || ||| ||| ||||| |
|
|
| T |
49213219 |
gttctcactttaattccct |
49213237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 21 - 224
Target Start/End: Original strand, 26756546 - 26756749
Alignment:
| Q |
21 |
tttaagcttctcagtagtagtcaaagcattcatcctctcaacctcaccttgcaactcagcttcccttagagccacagctttagcggcctcgacttcagcc |
120 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||| |||||||| |
|
|
| T |
26756546 |
tttaagcttctcagtggtagtcaaagcattcatcctctcaacctcaccttgcaactcagcttccctaagggccacagctttagcagcctcaacttcagcg |
26756645 |
T |
|
| Q |
121 |
acttgagcggccttagtccaagccgctttcttcttcgccaactcagcattagcctcagccacttcagcctctctttgattctcaaaaaccttcacttcag |
220 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| | |||||| | ||||||||| ||||| ||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
26756646 |
acttgagccgccttagtccaagccgctttcttcttagtcaactcggaattagcctcggccacctcagcctctctcttattctcaaaaaccttcacttcag |
26756745 |
T |
|
| Q |
221 |
tcct |
224 |
Q |
| |
|
|||| |
|
|
| T |
26756746 |
tcct |
26756749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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