View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0833_low_24 (Length: 228)
Name: NF0833_low_24
Description: NF0833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0833_low_24 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 11 - 228
Target Start/End: Original strand, 22578234 - 22578441
Alignment:
| Q |
11 |
gcatgtatccaaaccaatgcaaaagctatgaggttgagttgaggtttctttcaagcaaaggatttgcttttaattaactctgactatatatatctattat |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
22578234 |
gcatgtatccaaaccaatgcaaaagctatgaggttgag-----gtttctttcaagcaaaggatttgcttttaattaactctgactata----tctattat |
22578324 |
T |
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| Q |
111 |
ctactctacacaccatccattatcctaatatttttagtttggaaaatgttaatcaatgttcgtggaaacaaataggataaaactattttgaaaaatgttt |
210 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||| ||||||||| ||| |
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| T |
22578325 |
ctactctactcaccatccattatcctaatatttttagtttggaaaatgttaattaatgtccgtgaaaacaaataggataaaactatcttgaaaaat-ttt |
22578423 |
T |
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| Q |
211 |
aacatagagaataattga |
228 |
Q |
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|||||||||||||||||| |
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| T |
22578424 |
aacatagagaataattga |
22578441 |
T |
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