View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0833_low_3 (Length: 450)

Name: NF0833_low_3
Description: NF0833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0833_low_3
NF0833_low_3
[»] chr6 (11 HSPs)
chr6 (8-430)||(6496394-6496816)
chr6 (9-430)||(6461856-6462277)
chr6 (213-416)||(6465259-6465462)
chr6 (148-394)||(6473114-6473360)
chr6 (150-412)||(6505343-6505605)
chr6 (213-430)||(6526298-6526515)
chr6 (213-424)||(6528119-6528330)
chr6 (231-418)||(13035789-13035976)
chr6 (150-277)||(6516295-6516422)
chr6 (213-286)||(6457299-6457372)
chr6 (317-426)||(6523423-6523532)
[»] chr7 (2 HSPs)
chr7 (213-289)||(3754004-3754080)
chr7 (316-420)||(9665350-9665454)
[»] chr4 (1 HSPs)
chr4 (316-420)||(13536374-13536478)
[»] chr1 (2 HSPs)
chr1 (377-430)||(35231468-35231521)
chr1 (148-181)||(35244309-35244342)


Alignment Details
Target: chr6 (Bit Score: 419; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 8 - 430
Target Start/End: Original strand, 6496394 - 6496816
Alignment:
Q  8 cgaataatatgcatttgcagcttgacttgtgctcttatggtttcttccatctttatactgaattaaccctggactatgattgtggccatgataaagatca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6496394 cgaataatatgcatttgcagcttgacttgtgctcttatggtttcttccatctttatactgaattaaccctggactatgattgtggccatgataaagatca 6496493  T
Q  108 taatatcttaaacgtgtgtcatcggagtctggtcccgagttcaagttcataaaatctttcataagtgaataggccgcagacttatatttctcaccccatg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6496494 taatatcttaaacgtgtgtcatcggagtctggtcccgagttcaagttcataaaatctttcataagtgaataggccgcagacttatatttctcaccccatg 6496593  T
Q  208 cagtgtcaatcttagtaagaacagcaattccataaagaaagtatcctaagtgatcagcatgatcattatagattccgaaaccggaatcagcgttagaatc 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  6496594 cagtgtcaatcttagtaagaacagcaattccataaagaaagtatcctaagtgatcagcatgatcattatagattccgaaaccggaatcagcattagaatc 6496693  T
Q  308 aacagacccttgtatggtaacaatgccaccccatttatcatcttgtagaaatccattcccatttaaagttccatctaaccaaggctcaatggtttctttc 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6496694 aacagacccttgtatggtaacaatgccaccccatttatcatcttgtagaaatccattcccatttaaagttccatctaaccaaggctcaatggtttctttc 6496793  T
Q  408 aaaaacttcttaacctttggaat 430  Q
    |||||||||||||||||||||||    
T  6496794 aaaaacttcttaacctttggaat 6496816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 9 - 430
Target Start/End: Complemental strand, 6462277 - 6461856
Alignment:
Q  9 gaataatatgcatttgcagcttgacttgtgctcttatggtttcttccatctttatactgaattaaccctggactatgattgtggccatgataaagatcat 108  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||  || || |||||| |||     |||||    
T  6462277 gaataatatgcatttgcagcttggcttgtgctcttatggtttcttccatctttatgttgaattaaccctggagcataatggtggccttgaacgtaatcat 6462178  T
Q  109 aatatcttaaacgtgtgtcatcggagtctggtcccgagttcaagttcataaaatctttcataagtgaataggccgcagacttatatttctcaccccatgc 208  Q
    ||| ||||  ||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||   ||||| |||||||||||||||||    
T  6462177 aatctctttgacgtgggtcatcggagtctggtcctgagtccaagttcataaaatctttcataagtgaataggccttcgacttgtatttctcaccccatgc 6462078  T
Q  209 agtgtcaatcttagtaagaacagcaattccataaagaaagtatcctaagtgatcagcatgatcattatagattccgaaaccggaatcagcgttagaatca 308  Q
    |||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||  |||||| |||| |||||||||||||| ||||||||||||||     
T  6462077 agtgtcaatctttgtaagaactgcaattccataaagaaagtatcccaagtgatcagggtgatcactataaattccgaaaccggagtcagcgttagaatcc 6461978  T
Q  309 acagacccttgtatggtaacaatgccaccccatttatcatcttgtagaaatccattcccatttaaagttccatctaaccaaggctcaatggtttctttca 408  Q
    | ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  6461977 atagacccttgttcggtaacaatgccaccccatttatcatcttgtagaaatccattcccatttaaagttccatctaaccaaggctcaatggtttctttta 6461878  T
Q  409 aaaacttcttaacctttggaat 430  Q
    ||||||||||||||||||||||    
T  6461877 aaaacttcttaacctttggaat 6461856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 213 - 416
Target Start/End: Original strand, 6465259 - 6465462
Alignment:
Q  213 tcaatcttagtaagaacagcaattccataaagaaagtatcctaagtgatcagcatgatcattatagattccgaaaccggaatcagcgttagaatcaacag 312  Q
    |||||||| | ||| |||||||||||||| |||||||||||||| |||| |  |||||||||||| | |||||| ||  |||||||   || ||||  ||    
T  6465259 tcaatctttgcaagcacagcaattccatagagaaagtatcctaaatgataatgatgatcattataaactccgaatccaaaatcagcaccagtatcattag 6465358  T
Q  313 acccttgtatggtaacaatgccaccccatttatcatcttgtagaaatccattcccatttaaagttccatctaaccaaggctcaatggtttctttcaaaaa 412  Q
    |||||||| |||||||||| || ||||||||  |||| |  ||||||||||| ||||| ||||||||||| | |||||||||||| ||||| ||||||||    
T  6465359 acccttgtttggtaacaattcctccccattttccatcatagagaaatccatttccattaaaagttccatcaagccaaggctcaatagtttccttcaaaaa 6465458  T
Q  413 cttc 416  Q
    ||||    
T  6465459 cttc 6465462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 148 - 394
Target Start/End: Complemental strand, 6473360 - 6473114
Alignment:
Q  148 tcaagttcataaaatctttcataagtgaataggccgcagacttatatttctcaccccatgcagtgtcaatcttagtaagaacagcaattccataaagaaa 247  Q
    ||||| |||||||||||| ||| |||| ||||||   || ||||||||||| ||||||  | |  |||||||||| ||| || ||||||||||| |||||    
T  6473360 tcaaggtcataaaatcttccatgagtgcataggcttgaggcttatatttcttaccccaaactggatcaatcttagcaagcactgcaattccatagagaaa 6473261  T
Q  248 gtatcctaagtgatcagcatgatcattatagattccgaaaccggaatcagcgttagaatcaacagacccttgtatggtaacaatgccaccccatttatca 347  Q
    ||| ||||| |||| |  |||||||||||| |||||||| ||| |||||||    | ||||  ||| |||||| |||| | ||| || |||||||| | |    
T  6473260 gtaacctaaatgataatgatgatcattataaattccgaacccgaaatcagcaccggtatcagtagaaccttgtttggttataatacctccccatttttta 6473161  T
Q  348 tcttgtagaaatccattcccatttaaagttccatctaaccaaggctc 394  Q
    || |  ||||||||||| ||||| || |||||||| | |||||||||    
T  6473160 tcatagagaaatccatttccattaaatgttccatcgagccaaggctc 6473114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 150 - 412
Target Start/End: Original strand, 6505343 - 6505605
Alignment:
Q  150 aagttcataaaatctttcataagtgaataggccgcagacttatatttctcaccccatgcagtgtcaatcttagtaagaacagcaattccataaagaaagt 249  Q
    |||||||||||||||| || ||||||||||||   || ||||||||||  ||||||||  |  || |||||   ||| || || ||| | |||||||| |    
T  6505343 aagttcataaaatcttccacaagtgaataggcttgagccttatatttcctaccccatgttggatcgatctttacaagcactgctattgcgtaaagaaaat 6505442  T
Q  250 atcctaagtgatcagcatgatcattatagattccgaaaccggaatcagcgttagaatcaacagacccttgtatggtaacaatgccaccccatttatcatc 349  Q
    |||||||||||     ||||||||| || |||||||||||| ||||| |   |  ||||  ||||||||||   |||| ||  || |||||||| | |||    
T  6505443 atcctaagtgaaagtgatgatcattgtaaattccgaaaccgaaatcaccaccaccatcattagacccttgttgagtaataagtcctccccattttttatc 6505542  T
Q  350 ttgtagaaatccattcccatttaaagttccatctaaccaaggctcaatggtttctttcaaaaa 412  Q
     | |||||||||||| ||||| ||||||||||| | |||||||||||||||||| ||||||||    
T  6505543 atatagaaatccatttccattaaaagttccatcaagccaaggctcaatggtttccttcaaaaa 6505605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 213 - 430
Target Start/End: Original strand, 6526298 - 6526515
Alignment:
Q  213 tcaatcttagtaagaacagcaattccataaagaaagtatcctaagtgatcagcatgatcattatagattccgaaaccggaatcagcgttagaatcaacag 312  Q
    |||||||||| ||| || ||||||||||| |||||||||||||| |||| |  |||||||||||| | |||||| ||  |||||||    | ||    ||    
T  6526298 tcaatcttagcaagcactgcaattccatagagaaagtatcctaaatgataatgatgatcattataaactccgaacccaaaatcagcaccggcatttgtag 6526397  T
Q  313 acccttgtatggtaacaatgccaccccatttatcatcttgtagaaatccattcccatttaaagttccatctaaccaaggctcaatggtttctttcaaaaa 412  Q
    | || ||| |||| |||||  | |||||||| | ||| |  ||||||||||| ||||| ||||||||||| | |||||||||||||||||| |||||| |    
T  6526398 aaccatgtttggttacaatatctccccattttttatcataaagaaatccatttccattaaaagttccatcaagccaaggctcaatggtttccttcaaata 6526497  T
Q  413 cttcttaacctttggaat 430  Q
    |||  |||| ||||||||    
T  6526498 ctttctaacttttggaat 6526515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 213 - 424
Target Start/End: Original strand, 6528119 - 6528330
Alignment:
Q  213 tcaatcttagtaagaacagcaattccataaagaaagtatcctaagtgatcagcatgatcattatagattccgaaaccggaatcagcgttagaatcaacag 312  Q
    |||||||||| ||| ||||||||| |||||| ||| ||||| ||   | ||  ||||| |||||| ||||| |||||  | ||||| || ||||||  ||    
T  6528119 tcaatcttagcaagcacagcaattgcataaacaaaatatcccaaagtaccatgatgattattataaattccaaaaccatactcagcatttgaatcagtag 6528218  T
Q  313 acccttgtatggtaacaatgccaccccatttatcatcttgtagaaatccattcccatttaaagttccatctaaccaaggctcaatggtttctttcaaaaa 412  Q
    | |||||| | |||| ||| || |||||||| | ||| |  ||||||||||| || || ||||||||||| | ||||||||||||  | || |||||| |    
T  6528219 agccttgttttgtaataatccctccccattttttatcatagagaaatccattacctttgaaagttccatcaagccaaggctcaatcatctccttcaaata 6528318  T
Q  413 cttcttaacctt 424  Q
    ||||||||||||    
T  6528319 cttcttaacctt 6528330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 231 - 418
Target Start/End: Complemental strand, 13035976 - 13035789
Alignment:
Q  231 gcaattccataaagaaagtatcctaagtgatcagcatgatcattatagattccgaaaccggaatcagcgttagaatcaacagacccttgtatggtaacaa 330  Q
    ||||||||||| |||||||| ||||| |||| |  ||| |||||||| ||||| || ||| |||||||    | ||||  ||| |||||| | || | ||    
T  13035976 gcaattccatagagaaagtaacctaaatgataatgatggtcattataaattccaaacccgaaatcagcaccggtatcagtagaaccttgtttcgttataa 13035877  T
Q  331 tgccaccccatttatcatcttgtagaaatccattcccatttaaagttccatctaaccaaggctcaatggtttctttcaaaaacttctt 418  Q
    | || |||||||| | ||| |  ||||||||||| ||||| ||||||||||| | |||||||||||||| ||| |||||  |||||||    
T  13035876 tacctccccattttttatcatagagaaatccatttccattaaaagttccatcaagccaaggctcaatggattccttcaagtacttctt 13035789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 277
Target Start/End: Complemental strand, 6516422 - 6516295
Alignment:
Q  150 aagttcataaaatctttcataagtgaataggccgcagacttatatttctcaccccatgcagtgtcaatcttagtaagaacagcaattccataaagaaagt 249  Q
    ||||||||||| |||| ||||||||||||||       |||||| |||  ||||||||| |  |||||||||  ||| || ||||||||||||||||| |    
T  6516422 aagttcataaagtcttccataagtgaataggattgtttcttatacttcctaccccatgctggatcaatcttaacaagcactgcaattccataaagaaaat 6516323  T
Q  250 atcctaagtgatcagcatgatcattata 277  Q
    ||||||| |||| |  ||||||||||||    
T  6516322 atcctaattgataatgatgatcattata 6516295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 286
Target Start/End: Original strand, 6457299 - 6457372
Alignment:
Q  213 tcaatcttagtaagaacagcaattccataaagaaagtatcctaagtgatcagcatgatcattatagattccgaa 286  Q
    |||||||| | ||| || ||||||||||| |||||||||||||| |||| |  |||||||||||| || |||||    
T  6457299 tcaatctttgcaagcactgcaattccatagagaaagtatcctaaatgataatgatgatcattataaataccgaa 6457372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 426
Target Start/End: Original strand, 6523423 - 6523532
Alignment:
Q  317 ttgtatggtaacaatgccaccccatttatcatcttgtagaaatccattcccatttaaagttccatctaaccaaggctcaatggtttctttcaaaaacttc 416  Q
    |||| ||||||||||  | |||||||| | ||| | ||||||||||||    || ||||||||||| | ||||||||||||| | ||||||||| ||||     
T  6523423 ttgtttggtaacaatatctccccatttctgatcatatagaaatccattttatttgaaagttccatcaagccaaggctcaatgatctctttcaaatacttt 6523522  T
Q  417 ttaacctttg 426  Q
    ||||| ||||    
T  6523523 ttaacttttg 6523532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 289
Target Start/End: Complemental strand, 3754080 - 3754004
Alignment:
Q  213 tcaatcttagtaagaacagcaattccataaagaaagtatcctaagtgatcagcatgatcattatagattccgaaacc 289  Q
    |||||||| | |||||||||||||||||||||||| || ||||| |||| |  |||||||||||| ||||| |||||    
T  3754080 tcaatctttgcaagaacagcaattccataaagaaaataacctaaatgataatgatgatcattataaattccaaaacc 3754004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 420
Target Start/End: Complemental strand, 9665454 - 9665350
Alignment:
Q  316 cttgtatggtaacaatgccaccccatttatcatcttgtagaaatccattcccatttaaagttccatctaaccaaggctcaatggtttctttcaaaaactt 415  Q
    ||||| |||| ||||| || |||||||| | ||| |  |||||||||||  | || ||||||||||| ||||| || ||||| |||||||||||||||||    
T  9665454 cttgtttggttacaattcctccccatttctgatcatacagaaatccattttctttgaaagttccatcaaaccacggttcaatagtttctttcaaaaactt 9665355  T
Q  416 cttaa 420  Q
    |||||    
T  9665354 cttaa 9665350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 420
Target Start/End: Complemental strand, 13536478 - 13536374
Alignment:
Q  316 cttgtatggtaacaatgccaccccatttatcatcttgtagaaatccattcccatttaaagttccatctaaccaaggctcaatggtttctttcaaaaactt 415  Q
    ||||| |||| ||||| || |||||||| | ||| |  |||||||||||  | || ||||||||||| ||||| || ||||| |||||||||||||||||    
T  13536478 cttgtttggttacaattcctccccatttctgatcatacagaaatccattttctttgaaagttccatcaaaccacggttcaatagtttctttcaaaaactt 13536379  T
Q  416 cttaa 420  Q
    |||||    
T  13536378 cttaa 13536374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 430
Target Start/End: Complemental strand, 35231521 - 35231468
Alignment:
Q  377 tccatctaaccaaggctcaatggtttctttcaaaaacttcttaacctttggaat 430  Q
    |||||| | ||||||||||||| | ||||||||| |||||||||| ||||||||    
T  35231521 tccatcaagccaaggctcaatgatctctttcaaatacttcttaacttttggaat 35231468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 181
Target Start/End: Complemental strand, 35244342 - 35244309
Alignment:
Q  148 tcaagttcataaaatctttcataagtgaataggc 181  Q
    |||||||||||||||||||||| |||||||||||    
T  35244342 tcaagttcataaaatctttcatgagtgaataggc 35244309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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