View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0834-Insertion-1 (Length: 1198)

Name: NF0834-Insertion-1
Description: NF0834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0834-Insertion-1
NF0834-Insertion-1
[»] chr5 (26 HSPs)
chr5 (8-954)||(23860567-23861517)
chr5 (12-989)||(23813599-23814595)
chr5 (8-901)||(23819101-23819985)
chr5 (27-901)||(23769253-23770119)
chr5 (332-989)||(23732051-23732711)
chr5 (67-954)||(23673352-23674244)
chr5 (12-559)||(23764199-23764747)
chr5 (483-989)||(23729330-23729839)
chr5 (491-989)||(23644474-23644975)
chr5 (8-371)||(23774201-23774564)
chr5 (8-364)||(23754168-23754530)
chr5 (385-506)||(23766854-23766975)
chr5 (385-506)||(23816702-23816823)
chr5 (882-954)||(23780483-23780554)
chr5 (882-954)||(23867436-23867507)
chr5 (867-937)||(23687221-23687291)
chr5 (867-937)||(23737202-23737272)
chr5 (607-897)||(23766469-23766762)
chr5 (607-897)||(23816317-23816610)
chr5 (439-515)||(11081805-11081881)
chr5 (8-47)||(41973941-41973980)
chr5 (447-496)||(20292995-20293044)
chr5 (778-840)||(16947834-16947896)
chr5 (447-496)||(20301443-20301492)
chr5 (447-496)||(20305856-20305905)
chr5 (447-496)||(20310260-20310309)
[»] chr3 (55 HSPs)
chr3 (672-899)||(1940176-1940399)
chr3 (676-834)||(2932153-2932311)
chr3 (649-800)||(997784-997935)
chr3 (760-822)||(1027798-1027860)
chr3 (665-841)||(989623-989798)
chr3 (665-829)||(1022695-1022859)
chr3 (649-800)||(1014174-1014325)
chr3 (759-829)||(1007761-1007831)
chr3 (445-515)||(4142117-4142187)
chr3 (676-834)||(1889244-1889408)
chr3 (405-515)||(3754558-3754668)
chr3 (8-45)||(1941033-1941070)
chr3 (666-706)||(956612-956652)
chr3 (445-505)||(4157937-4157997)
chr3 (667-799)||(7431747-7431879)
chr3 (391-506)||(956325-956440)
chr3 (8-47)||(1004034-1004073)
chr3 (8-47)||(1022031-1022070)
chr3 (86-137)||(1931525-1931576)
chr3 (404-510)||(2686300-2686409)
chr3 (676-778)||(1890772-1890874)
chr3 (445-503)||(2696727-2696785)
chr3 (445-506)||(1007459-1007520)
chr3 (445-506)||(1022487-1022548)
chr3 (8-45)||(1891524-1891561)
chr3 (8-45)||(1898131-1898168)
chr3 (8-45)||(1907577-1907614)
chr3 (666-715)||(1936757-1936806)
chr3 (8-45)||(2931472-2931509)
chr3 (445-510)||(3746006-3746071)
chr3 (665-710)||(12133312-12133357)
chr3 (436-516)||(989385-989465)
chr3 (8-47)||(968235-968274)
chr3 (676-715)||(1897448-1897487)
chr3 (676-715)||(1906894-1906933)
chr3 (676-715)||(1930946-1930985)
chr3 (86-137)||(1937348-1937399)
chr3 (8-43)||(1937439-1937474)
chr3 (310-345)||(12132951-12132986)
chr3 (676-715)||(12218280-12218319)
chr3 (447-498)||(37753345-37753396)
chr3 (759-801)||(802884-802926)
chr3 (421-503)||(803213-803295)
chr3 (865-899)||(900375-900409)
chr3 (447-509)||(2644351-2644413)
chr3 (447-509)||(2659141-2659203)
chr3 (447-509)||(7334228-7334290)
chr3 (681-715)||(7427364-7427398)
chr3 (12-46)||(12132625-12132659)
chr3 (666-707)||(783590-783631)
chr3 (665-706)||(802977-803018)
chr3 (445-510)||(2678387-2678452)
chr3 (311-352)||(2678542-2678583)
chr3 (8-45)||(2697204-2697241)
chr3 (447-496)||(13498224-13498273)
[»] chr8 (2 HSPs)
chr8 (8-137)||(19727420-19727549)
chr8 (8-45)||(31144856-31144893)
[»] chr4 (6 HSPs)
chr4 (759-822)||(22671811-22671874)
chr4 (435-503)||(20019767-20019835)
chr4 (661-794)||(20019473-20019600)
chr4 (435-503)||(20016180-20016249)
chr4 (8-44)||(20020248-20020284)
chr4 (393-520)||(22672105-22672232)
[»] chr2 (3 HSPs)
chr2 (665-753)||(33038434-33038522)
chr2 (863-900)||(36577819-36577856)
chr2 (665-707)||(33026902-33026944)
[»] chr6 (2 HSPs)
chr6 (665-710)||(24417244-24417289)
chr6 (676-715)||(9819606-9819645)
[»] chr7 (2 HSPs)
chr7 (312-372)||(1078301-1078361)
chr7 (12-46)||(1078664-1078698)
[»] scaffold0200 (1 HSPs)
scaffold0200 (8-47)||(1249-1288)
[»] scaffold0044 (1 HSPs)
scaffold0044 (667-715)||(89387-89435)
[»] chr1 (1 HSPs)
chr1 (446-515)||(51381438-51381507)


Alignment Details
Target: chr5 (Bit Score: 741; Significance: 0; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 741; E-Value: 0
Query Start/End: Original strand, 8 - 954
Target Start/End: Complemental strand, 23861517 - 23860567
Alignment:
Q  8 tgtggaacccttccattagaaaattcaaggaattgcccccatttgaattgcaacatactggttataatcttcagatgcatggcttcggccatgatcctat 107  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  23861517 tgtggaacccttccattagaaaattcaaggaattgcccccacttgaattgcaacatactggttataatcttcagatgcacggcttcggccatgatcctat 23861418  T
Q  108 ttctgatcattacaaggtggtggttgtttttcgggataataacaaaactgatgtaaag-tggttcataatgtgggtaccaatttctggaaagacattaaa 206  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||    
T  23861417 ttctgataattacaaggtggtggttgtttttcgggatcataacaaaactgatgtaaaggtgcttcataatgtgggtaccaatatctggaaagacattaaa 23861318  T
Q  207 gagacgttccactatgatcagttcattgtggagcagaaatctggaaaatatgtgaatggcactattaattggttggcttctcaagattatggtaaaagtc 306  Q
    ||||||||||| ||||||  ||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||| |||||||| ||||| |||    
T  23861317 gagacgttccaatatgatgggttcattgtggagcagaaatcgggaaaatatgtgaatggcgcgattaattggttggcttctaaagattatagtaaaggtc 23861218  T
Q  307 aaagttttattgcttcttttgatttgggaaaagagtcttataaaaaagttttgctacctgattatgattatagagcaatagattcacgtactttgcactt 406  Q
    || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23861217 aacgttttattgcttcttttgatttgggaaacgagtcttataaaaaagttttgctacctgattatgattatagagcaatagattcacgtactttgcactt 23861118  T
Q  407 gagtgttttcgggaattgtttgtgctggatttctagtaatgatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcactatt 506  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23861117 gagtgttttcaggaattgtttgtgctggatttctagtaatgatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcactatt 23861018  T
Q  507 cctttcatgccatcttattatttctttgccaatggaatgcatatttttgaggatggcctagtgacgtggaattctacaacggtttcgacccggagctggg 606  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||  || ||||||||||| || ||    
T  23861017 cctttcatgccatcttattatttctttgccaatgtaatgcatatttttgaggatggcctagtgacgtggaagtctacacaggattcgacccggaacttgg 23860918  T
Q  607 ttttttacaattctataaatggctttgtaaagttttc---ttttcagtttgaatccatcctagaagtctgcattgaaagtttgatatcaccttgttctta 703  Q
    ||||||||||||||| |||||||| ||||||||||||   |||||||||| ||| |||||||||||||||| ||||||||||  ||||||||| ||||||    
T  23860917 ttttttacaattctacaaatggctctgtaaagttttcttattttcagtttaaattcatcctagaagtctgcgttgaaagtttagtatcaccttattctta 23860818  T
Q  704 atgttagaatgtcgtagtgatgctatatcgcttgaacatgagattcaactaaaaactatattttaatttatgtttatgatatttattttgtacttgttct 803  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| || |||||||    
T  23860817 atgttagaatgtagtagtgatgcgatatcgcttgaacatgagattcaactaaaaactatattttaatttatacttatgatatttattttataattgttct 23860718  T
Q  804 gattattagctacttcatggatcattattaattaatggtcatcttaatctgtagcttgatagagaaattgtagttattttcatttatttgtttgttaaag 903  Q
    |||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  23860717 gattattacctacttcatgggtcattactaattaatggtcatcttaatctgtagcttgataaataaattgtagttattttcatttatttgtttgttaaag 23860618  T
Q  904 atttttattatctcttcatgcattattgcatttcaatttatataattccca 954  Q
     ||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  23860617 gtttttattatctcctcatgcattattgcatttcagtttatataattccca 23860567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 721; E-Value: 0
Query Start/End: Original strand, 12 - 989
Target Start/End: Complemental strand, 23814595 - 23813599
Alignment:
Q  12 gaacccttccattagaaaattcaaggaattgcccccatttgaattgcaacatactggttataatcttcagatgcatggcttcggccatgatcctatttct 111  Q
    |||||||||||||||||||||||   ||||||||||| |||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||    
T  23814595 gaacccttccattagaaaattcattcaattgcccccacttgaattgcaacttaatggttatattcttcagatgcatggcttcggccatgatcctatttct 23814496  T
Q  112 gatcattacaaggtggtggttgtttttcgggat---------------aataacaaaactgatgtaaag-tggttcataatgtgggtaccaatttctgga 195  Q
    ||| |||||||||||||||||||||||| ||||               ||||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  23814495 gataattacaaggtggtggttgtttttctggattatgatagcactgataataacaaaactgatgtaaaggtggttcataatgtgggtaccaatatctgga 23814396  T
Q  196 aagacattaaagagacgttccactatgatcagttcattgtggagcagaaatctggaaaatatgtgaatggcactattaattggttggcttctcaagatta 295  Q
    |||||||||||||||| ||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||    
T  23814395 aagacattaaagagacattccaatatgatcggttcattgtggagcagaaatcaggaaaatatgtgaatggcacgattaattggttggcttctaaagatta 23814296  T
Q  296 tggtaaaagtcaaagttttattgcttcttttgatttgggaaaagagtcttataaaaaagttttgctacctgattatgattatagagcaatagattcacgt 395  Q
    | ||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |    
T  23814295 tagtaaaggtcaacgttttattgcttcttttgatttgggaaacgagtcttataaaaaagttttgctacctgattgtgattatagagcaatagattcactt 23814196  T
Q  396 actttgcacttgagtgttttcgggaattgtttgtgctggatttctagtaatgatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaat 495  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  23814195 actttgcacttgagtgttttcgggaattgtttgtgctggatttctagtaatgatgtttggataatgaaggaatatgggatgacagcgtcttggactaaat 23814096  T
Q  496 tgttcactattcctttcatgccatcttattatttctttgccaatggaatgcatatttttgaggatggcctagtgacgtggaattctacaacggtttcgac 595  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||   || |||||     
T  23814095 tgttcactattcctttcatgccatcttattatttctttgccaatgtaatgcatatttttgaggatggcctagtgacgtggaagtctacgcaggattcgat 23813996  T
Q  596 ccggagctgggttttttacaattctataaatggctttgtaaagttttc---ttttcagtttgaatccatcctagaagtctgcattgaaagtttgatatca 692  Q
    ||  | || |||||||||||||||||||||||||| ||||||||||||   |||||||||||||| |||||||||||||||| | |||||||||||||||    
T  23813995 ccaaaacttggttttttacaattctataaatggctctgtaaagttttcttattttcagtttgaattcatcctagaagtctgcgtcgaaagtttgatatca 23813896  T
Q  693 ccttgttcttaatgttagaatgtcgtagtgatgctatatcgcttgaacatgagattcaactaaaaactatattttaatttatgtttatgatatttatttt 792  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  23813895 ccttgttcttaatgttagaatgtagtagtgatgctatatcgcttgaacatgagattcaactaagaactatattttaatttatgtttatgatatttatttt 23813796  T
Q  793 gtacttgttctgattattagctacttcatggatcattattaattaatggtcatcttaatctgtagcttgatagagaaattgtagttattttcatttattt 892  Q
    ||||||||||| ||||| ||||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23813795 gtacttgttcttattatcagctacttcatgtgtcattactaattaatggtcatcttaatctgtagcttgatagagaaattgtagttattttcatttattt 23813696  T
Q  893 gtttgttaaagatttttattatctcttcatgcattattgcatttcaatttatataattcccagtcattagtatgtttgggtaaatgcctgctctgag 989  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||| ||||    
T  23813695 gtttgttaaaggtttttattatctcctcatgcattattgcatttcagtttatataattcccagtcattagtttgtttggttaaatgcctgctatgag 23813599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 628; E-Value: 0
Query Start/End: Original strand, 8 - 901
Target Start/End: Complemental strand, 23819985 - 23819101
Alignment:
Q  8 tgtggaacccttccattagaaaattcaaggaattgcccccatttgaattgcaacatactggttataatcttcagatgcatggcttcggccatgatcctat 107  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||    
T  23819985 tgtggaacccttccattagaaaattcaaggaattgcccccacttgaattgcaacatgctggttataattttcagatgcacggcttcggccatgatcctat 23819886  T
Q  108 ttctgatcattacaaggtggtggttgtttttcgggataataacaaaactgatgtaaag-tggttcataatgtgggtaccaatttctggaaagacattaaa 206  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  23819885 ttctgataattacaaggtggtggttgtttttcgggataataacaaaactgatgtaaaggtggttcataatgtgggtaccaatttctggaaagacattaaa 23819786  T
Q  207 gagacgttccactatgatcagttcattgtggagcagaaatctggaaaatatgtgaatggcactattaattggttggcttctcaagattatggtaaaagtc 306  Q
    ||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||| ||||| |||    
T  23819785 gagacgttccaatatgatcggttcattgtggagcagaaatcgggaaaatatgtgaatggcacgattaattggttggcttctaaagattatagtaaaggtc 23819686  T
Q  307 aaagttttattgcttcttttgatttgggaaaagagtcttataaaaaagttttgctacctgattatgattatagagcaatagattcacgtactttgcactt 406  Q
    || |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||| | ||||||||||||||||||    
T  23819685 aacgttttattgcttcttttgatttgggaaacgagtcttataaaaaagttttgctaccggattatgattatagagaaattggttcacgtactttgcactt 23819586  T
Q  407 gagtgttttcgggaattgtttgtgctggatttctagtaatgatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcactatt 506  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||     
T  23819585 gagtgttttcgggaattgtttgtgctggatttgtagtaatgatgtttggattatgaaggaatatgggaataaagcgtcttggactaaattgttcactata 23819486  T
Q  507 cctttcatgccatcttatt---atttctttgccaatggaatgcatatttttgaggatggcctagtgacgtggaattctacaacggtttcgacccggagct 603  Q
    |||||||||||||||||||   || |||||||||||| |||||||||||||||||||||||||||||||||||| |||||   || || |||||||| ||    
T  23819485 cctttcatgccatcttattatcatctctttgccaatgtaatgcatatttttgaggatggcctagtgacgtggaagtctacgcaggatttgacccggaact 23819386  T
Q  604 gggttttttacaattctataaatggctttgtaaagttttc---ttttcagtttgaatccatcctagaagtctgcattgaaagtttgatatcaccttgttc 700  Q
     |||||||||||||||||||||||||| ||||||||||||   ||||||||||  || |||||||||| ||||| |||||||||||||||||||||||||    
T  23819385 tggttttttacaattctataaatggctctgtaaagttttcttattttcagtttagatacatcctagaaatctgcgttgaaagtttgatatcaccttgttc 23819286  T
Q  701 ttaatgttagaatgtcgtagtgatgctatatcgcttgaacatgagattcaactaaaaactatattttaatttatgtttatgatatttattttgtacttgt 800  Q
    ||||||||||||||| || ||||||||||                |||||||||||||||||||||||||||||||||||||||||||| | | ||| ||    
T  23819285 ttaatgttagaatgtagttgtgatgctat----------------attcaactaaaaactatattttaatttatgtttatgatatttatctcgcactcgt 23819202  T
Q  801 tctgattattagctacttcatggatcattattaattaatggtcatcttaatctgtagcttgatagagaaattgtagttattttcatttatttgtttgtta 900  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  23819201 tctgattattagctacttcatggatcattattaattaatggtcatcttaatctgtagcttgatagagaaattgtagttattttcatttatttgattgtta 23819102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 594; E-Value: 0
Query Start/End: Original strand, 27 - 901
Target Start/End: Complemental strand, 23770119 - 23769253
Alignment:
Q  27 aaaattcaaggaattgcccccatttgaa-ttgcaacatactggttataatcttcagatgcatggcttcggccatgatcctatttctgatcattacaaggt 125  Q
    |||||||||||||||||||||| ||||| ||||||||| ||||||||||| |||||||||| ||||| ||||||||||||||||||||| |||||||||     
T  23770119 aaaattcaaggaattgcccccacttgaaattgcaacatgctggttataattttcagatgcacggctttggccatgatcctatttctgataattacaaggg 23770020  T
Q  126 ggtggttgtttttcgggataataacaaaactgatgtaaag-tggttcataatgtgggtaccaatttctggaaagacattaaagagacgttccactatgat 224  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  23770019 ggtggttgtttttcgggataataacaaaactgatgtaaaggtggttcataatgtgggtaccaatttctggaaagacattaaagagacgttccaatatgat 23769920  T
Q  225 cagttcattgtggagcagaaatctggaaaatatgtgaatggcactattaattggttggcttctcaagattatggtaaaagtcaaagttttattgcttctt 324  Q
    | ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||| ||||| ||||| |||||||||||||||    
T  23769919 cggttcattgtggagcagaaatcgggaaaatatgtgaatggcacgattaattggttggcttctaaagattatagtaaaggtcaacgttttattgcttctt 23769820  T
Q  325 ttgatttgggaaaagagtcttataaaaaagttttgctacctgattatgattatagagcaatagattcacgtactttgcacttgagtgttttcgggaattg 424  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||    
T  23769819 ttgatttgggaaacgagtcttataaaaaagttttgctaccggattatgattatagagaaattggttcacgtactttgcacttgagtgttttcgggaattg 23769720  T
Q  425 tttgtgctggatttctagtaatgatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcactattcctttcatgccatcttat 524  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  23769719 tttgtgctggatttgtagtaatgatgtttggattatgaaggaatatgggaataaagcgtcttggactaaattgttcactatacctttcatgccatcttat 23769620  T
Q  525 t---atttctttgccaatggaatgcatatttttgaggatggcctagtgacgtggaattctacaacggtttcgacccggagctgggttttttacaattcta 621  Q
    |   || |||||||||||| |||||||||||||||||||||||||||||||||||| |||||   || || |||||||| || |||||||||||||||||    
T  23769619 tatcatctctttgccaatgtaatgcatatttttgaggatggcctagtgacgtggaagtctacgcaggatttgacccggaacttggttttttacaattcta 23769520  T
Q  622 taaatggctttgtaaagttttc---ttttcagtttgaatccatcctagaagtctgcattgaaagtttgatatcaccttgttcttaatgttagaatgtcgt 718  Q
    ||||||||| ||||||||||||   ||||||||||  || |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||    
T  23769519 taaatggctctgtaaagttttcttattttcagtttagatacatcctagaaatctgcgttgaaagtttgatatcaccttgttcttaatgttagaatgtagt 23769420  T
Q  719 agtgatgctatatcgcttgaacatgagattcaactaaaaactatattttaatttatgtttatgatatttattttgtacttgttctgattattagctactt 818  Q
     ||||||||||                |||||||||||||||||||||||||||||||||||||||||||| | | ||| ||||||||||||||||||||    
T  23769419 tgtgatgctat----------------attcaactaaaaactatattttaatttatgtttatgatatttatctcgcactcgttctgattattagctactt 23769336  T
Q  819 catggatcattattaattaatggtcatcttaatctgtagcttgatagagaaattgtagttattttcatttatttgtttgttaa 901  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  23769335 catggatcattattaattaatggtcatcttaatctgtagcttgatagagaaattgtagttattttcatttatttgattgttaa 23769253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 332 - 989
Target Start/End: Original strand, 23732051 - 23732711
Alignment:
Q  332 gggaaaagagtcttataaaaaagttttgctacct-gattatgattatagagcaatagattcacgtactttgcacttgagtgttttcgggaattgtttgtg 430  Q
    |||||| ||||||||||||||||||||||| ||| ||||||||||| ||| ||||||||||| || |||| ||||||||||||||| |||||||||||||    
T  23732051 gggaaacgagtcttataaaaaagttttgcttccttgattatgattaaagaacaatagattcatgttctttccacttgagtgttttcaggaattgtttgtg 23732150  T
Q  431 ctggatttctagtaatgatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcactattcctttc-atgccatcttattattt 529  Q
     |||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||| |||| ||||||||||||||||| |||||||   |||||||    
T  23732151 gtggatttctagtaatgatgtttggattatgaaggaatatgggaataaagcgtcttggaataaactgttcactattcctttccatgccat---attattt 23732247  T
Q  530 ctttgccaatggaatgcatat-ttttgaggatggcctagtgacgtggaattctacaacggtttcgacccggagctgggttttttacaattctataaatgg 628  Q
    ||||||||||| ||||||||  ||||||||||||||||||||||||||| ||||||  || ||||||||||| || ||||||||||||||||| ||||||    
T  23732248 ctttgccaatgtaatgcataaattttgaggatggcctagtgacgtggaagtctacacaggattcgacccggaacttggttttttacaattctacaaatgg 23732347  T
Q  629 ctttgtaaagttttctt---ttcagtttgaatccatcctagaagtctgcattgaaagtttgatatcaccttgttcttaatgttagaatgtcgtagtgatg 725  Q
    || ||| ||||||||||   || ||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  23732348 ctctgttaagttttcttattttaagtttgaattcatcctagaagtctgcgttgaaagtttgatattaccttgttcttaatgttagaatgtcgtagtgatg 23732447  T
Q  726 ctatatcgcttgaacatgagattcaactaaaaactatattttaatttatgtttatgatatttattttgtacttgttctgattattagctacttcatggat 825  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |  || |||||||||||||||||||||||||||    
T  23732448 ctatatcgcttgaacatgagattcaactaaaaactatattttaatttatgtttatgatatttatctcgcgctagttctgattattagctacttcatggat 23732547  T
Q  826 cattattaattaatggtcatcttaatctgtagcttgatagagaaattgtagttattttcatttatttgtttgttaaagatttttattatctcttcatgca 925  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  23732548 cattattaattaatggtcatcttaatctgtagcttgatagagaaattgtggttattttcatttatttgtttgttaaaggtttttattatctcttcatgca 23732647  T
Q  926 ttattgcatttcaatttatataattcccagtcattagtatgtttgggtaaatgcctgctctgag 989  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||| ||||    
T  23732648 ttattgcatttcagtttagataattcccagtcattagtatgtttggttaaatgcctgctatgag 23732711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 67 - 954
Target Start/End: Original strand, 23673352 - 23674244
Alignment:
Q  67 ggttataatcttcagatgcatggcttcggccatgatcctatttctgatcattacaaggtggtggttgtttttcgggataataacaaaactgatgtaaag- 165  Q
    ||||||| ||||||||| || |  |||| ||| | ||||||||||||    |||| ||| ||||| ||||||||||||  || |||||| |||||| ||     
T  23673352 ggttatactcttcagatacacgtattcgtccaaggtcctatttctgacacgtacatggttgtggtagtttttcgggatcgtagcaaaacagatgtacaga 23673451  T
Q  166 tggttcataatgtgggtaccaatttctggaaagacattaaagagacgttccactatgatcagttcattgtggagcaga-aatctggaaaatatgtgaatg 264  Q
    || ||| ||||| |||| ||||| ||||| ||||||||| ||||||| |||| ||||||    ||||||||||||||  |||| |||  ||| ||| | |    
T  23673452 tgcttcgtaatgagggtgccaatatctggtaagacattatagagacgctccaatatgatggtctcattgtggagcagccaatcgggagcataagtggagg 23673551  T
Q  265 gcactattaattggttggcttctcaagattatggtaaaagtcaaagttttattgcttcttttgatttgggaaaagagtcttataaaaaagttttgctacc 364  Q
    || | || ||||||||||||||| | ||| || |||||||||||  ||||||| ||||||||||||||||||  ||||||||||||||||||||| ||||    
T  23673552 gcgcgatcaattggttggcttctaatgatcatagtaaaagtcaacattttatttcttcttttgatttgggaagcgagtcttataaaaaagttttgttacc 23673651  T
Q  365 tgattatgattatagagcaatagattcacgtactttgcacttgagtgttttcgggaattgtttgtgctggatttctagtaatgatgtttggataatgaag 464  Q
     ||||||||||||||| ||| ||| ||||| ||||||| | |||||||| || | || ||||| || ||||| |||||||||||||||||||||||||||    
T  23673652 agattatgattatagaacaacagaatcacgaactttgctcctgagtgttgtcagcaagtgtttttggtggatgtctagtaatgatgtttggataatgaag 23673751  T
Q  465 gaatatgggatgaaagcgtcttggactaaattgttcactattcctttcatgccatcttattatttctttgccaatggaatgcatatttttgaggatggcc 564  Q
    ||| ||  || |||| | || ||| ||||||||||| | ||||||||| | ||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  23673752 gaagattagaagaaaacatcgtggtctaaattgttcgccattcctttcctcccatcctattatttctttgccaatgtaatgcatatttttgaggatggcc 23673851  T
Q  565 tagtgacgtggaattctacaacggtttcgacccggagctgggttttttacaattctataaatggctttgtaaagttttctt---ttcagtttgaatccat 661  Q
    ||||||||||||| ||||||  || ||||||||||| || ||||||||||||||||| |||||||| ||||||||||||||   |||||||| ||| |||    
T  23673852 tagtgacgtggaagtctacacaggattcgacccggaacttggttttttacaattctacaaatggctctgtaaagttttcttattttcagtttaaattcat 23673951  T
Q  662 cctagaagtctgcattgaaagtttgatatcaccttgttcttaatgttagaatgtcgtagtgatgctatatcgcttgaacatgagattcaactaaaaacta 761  Q
    ||||||||||||| ||||||||||  ||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  23673952 cctagaagtctgcgttgaaagtttagtatcaccttattcttaatgttagaatgtagtagtgatgcgatatcgcttgaacatgagattcaactaaaaacta 23674051  T
Q  762 tattttaatttatgtttatgatatttattttgtacttgttctgattattagctacttcatggatcattattaattaatggtcatcttaatctgtagcttg 861  Q
    |||||||||||||  |||||||||||||||| || ||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  23674052 tattttaatttatacttatgatatttattttataattgttctgattattacctacttcatgggtcattactaattaatggtcatcttaatctgtagcttg 23674151  T
Q  862 atagagaaattgtagttattttcatttatttgtttgttaaagatttttattatctcttcatgcattattgcatttcaatttatataattccca 954  Q
    ||| | |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  23674152 ataaataaattgtagttattttcatttatttgtttgttaaaggtttttattatctcctcatgcattattgcatttcagtttatataattccca 23674244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 12 - 559
Target Start/End: Complemental strand, 23764747 - 23764199
Alignment:
Q  12 gaacccttccattagaaaattcaaggaattgcccccatttgaattgcaacatactggttataatcttcagatgcatggcttcggccatgatcctatttct 111  Q
    |||||||||||||||||||||||   ||||||||||| |||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||    
T  23764747 gaacccttccattagaaaattcattcaattgcccccacttgaattgcaacttaatggttatattcttcagatgcatggcttcggccatgatcctatttct 23764648  T
Q  112 gatcattacaaggtggtggttgtttttcgggataataacaaaactgatgtaaag-tggttcataatgtgggtaccaatttctggaaagacattaaagaga 210  Q
    ||| |||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  23764647 gataattacaaggtggtggttgtttttctggataataacagaactgatgtaaaggtggttcataatgtgggtaccaatttctggaaagacattatagaga 23764548  T
Q  211 cgttccactatgatcagttcattgtggagcagaaatctggaaaatatgtgaatggcactattaattggttggcttctcaagattatggtaaaagtcaaag 310  Q
    ||||||| ||||||  ||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||| |||||||||||||| ||||| |    
T  23764547 cgttccaatatgatgggttcattgtggagcagaaatcgggaaaatatgtgaatggcgcttttaattggttggcttctaaagattatggtaaaggtcaatg 23764448  T
Q  311 ttttattgcttcttttgatttgggaaaagagtcttataaaaaagttttgctacctgattatgattatagagcaatagattcacgtactttgcacttgagt 410  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| | | |||||||||||||||||||||| |    
T  23764447 ttttattgcttcttttgatttgggaaacgagtcttataaaaaagttttgctaccggattatgattatagagaatttgattcacgtactttgcacttgatt 23764348  T
Q  411 gttttcgggaattgtttgtgctggatttctagtaatgatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcactattcctt 510  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  23764347 gttttccggaattgtttgtgctggatttgtagtaatgatgtttggataatgaaggaatatgggatgaaagcgtcttggactacattgttcactattcctt 23764248  T
Q  511 tcatgccatcttattatttctttgccaatggaatgcatatttttgagga 559  Q
    ||||||||||||||||||||||| | |||| ||||| || |||||||||    
T  23764247 tcatgccatcttattatttcttttctaatgaaatgcttaattttgagga 23764199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 483 - 989
Target Start/End: Original strand, 23729330 - 23729839
Alignment:
Q  483 tcttggactaaattgttcactattcctttcatgccatcttattatttctttgccaatggaatgcatatttttgaggatggcctagtgacgtggaattcta 582  Q
    ||||||||||||||| |||||| ||||||||  |||||||||||| ||||||||| || |||||||| ||||||||||||||||||||||||||| ||||    
T  23729330 tcttggactaaattgctcactactcctttcaacccatcttattatctctttgccattgtaatgcataattttgaggatggcctagtgacgtggaagtcta 23729429  T
Q  583 caacggtttcgacccggagctgggttttttacaattctataaatggctttgtaaagttttctt---ttcagtttgaatccatcctagaagtctgcattga 679  Q
    ||  || ||||||||||| || ||||||||||||||||| |||||||| ||| ||||||||||   || ||||||||| |||||||||||||||| ||||    
T  23729430 cacaggattcgacccggaacttggttttttacaattctacaaatggctctgttaagttttcttattttaagtttgaattcatcctagaagtctgcgttga 23729529  T
Q  680 aagtttgatatcaccttgttcttaatgttagaatgtcgtagtgatgctatatcgcttgaacatgagattcaactaaaaactatattttaatttatgttta 779  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23729530 aagttcgatattaccttgttcttaatgttagaatgtcgtagtgatgctacatcgcttgaacatgagattcaactaaaaactatattttaatttatgttta 23729629  T
Q  780 tgatatttattttgtacttgttctgattattagctacttcatggatcattattaattaatggtcatcttaatctgtagcttgatagagaaattgtagtta 879  Q
    |||||||||| | | ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  23729630 tgatatttatctcgcactagttctgattattagctacttcgtggatcattattaattaatggtcatcttaatctgtagcttgatagagaaattgtggtta 23729729  T
Q  880 ttttcatttatttgtttgttaaagatttttattatctcttcatgcattattgcatttcaatttatataattcccagtcattagtatgtttgggtaaatgc 979  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||| ||    
T  23729730 ttttcatttatttgtttgttaaaggtttttattatctcctcatgcattattgcatttcagtttatataattcccagtcattagtatggttggttaaaagc 23729829  T
Q  980 ctgctctgag 989  Q
    ||||| ||||    
T  23729830 ctgctatgag 23729839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 491 - 989
Target Start/End: Original strand, 23644474 - 23644975
Alignment:
Q  491 taaattgttcactattcctttcatgccatcttattatttctttgccaatggaatgcatatttttgaggatggcctagtgacgtggaattctacaacggtt 590  Q
    |||||||||| | ||| || |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||  || |    
T  23644474 taaattgttctccattactctcatcccatcttattatttctttgccaatgtaatgcatatttttgaggatggcctagtgacgtggaagtctacacaggat 23644573  T
Q  591 tcgacccggagctgggttttttacaattctataaatggctttgtaaagttttctt---ttcagtttgaatccatcctagaagtctgcattgaaagtttga 687  Q
    |||| ||||| || ||||||||||||||||| |||||||| ||| ||||||||||   |||||||||||| |||||||||||||||| ||||||||||||    
T  23644574 tcgatccggaacttggttttttacaattctacaaatggctctgttaagttttcttattttcagtttgaattcatcctagaagtctgcgttgaaagtttga 23644673  T
Q  688 tatcaccttgttcttaatgttagaatgtcgtagtgatgctatatcgcttgaacatgagattcaactaaaaactatattttaatttatgtttatgatattt 787  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  23644674 tatcaccttgttcttaatgttagaatgtagtagtgatgctatatcgcttgaacatgagattcaactaagaactatattttaatttatgtttatgatattt 23644773  T
Q  788 attttgtacttgttctgattattagctacttcatggatcattattaattaatggtcatcttaatctgtagcttgatagagaaattgtagttattttcatt 887  Q
    || | |  || ||||| ||||| ||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23644774 atctcgcgctagttcttattatcagctacttcatgtgtcattactaattaatggtcatcttaatctgtagcttgatagagaaattgtagttattttcatt 23644873  T
Q  888 tatttgtttgttaaagatttttattatctcttcatgcattattgcatttcaatttatataattcccagtcattagtatgtttgggtaaatgcctgctctg 987  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||| ||    
T  23644874 tatttgtttgttaaaggtttttattatctcctcatgcattattgcatttcagtttatataattcccagtcattagtttgtttggttaaatgcctgctatg 23644973  T
Q  988 ag 989  Q
    ||    
T  23644974 ag 23644975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 8 - 371
Target Start/End: Complemental strand, 23774564 - 23774201
Alignment:
Q  8 tgtggaacccttccattagaaaattcaaggaattgcccccatttgaattgcaacatactggttataatcttcagatgcatggcttcggccatgatcctat 107  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  23774564 tgtggaacccttccattagaaaattcaaggaattgcccccacttgaattgcaacatactggttataatcttcagatgcacggcttcggccatgatcctat 23774465  T
Q  108 ttctgatcattacaaggtggtggttgtttttcgggataataacaaaactgatgtaaa-gtggttcataatgtgggtaccaatttctggaaagacattaaa 206  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||    
T  23774464 ttctgataattacaaggtggtggttgtttttcgggatcataacaaaactgatgtaaaggtgcttcataatgtgggtaccaatatctggaaagacattaaa 23774365  T
Q  207 gagacgttccactatgatcagttcattgtggagcagaaatctggaaaatatgtgaatggcactattaattggttggcttctcaagattatggtaaaagtc 306  Q
    ||||||||||| ||||||  ||||||||||||||||||||| |||||||||||||||||| | | || | ||||||||| | |||||||| |||||||||    
T  23774364 gagacgttccaatatgatgggttcattgtggagcagaaatcgggaaaatatgtgaatggcgcgaatattgggttggcttttaaagattat-gtaaaagtc 23774266  T
Q  307 aaagttttattgcttcttttgatttgggaaaa-gagtcttataaaaaagttttgctacctgattat 371  Q
    || |||||| || ||||||||||| |||||||  ||||||| |||||||||||| |||| ||||||    
T  23774265 aacgtttta-tggttcttttgattggggaaaacaagtcttaaaaaaaagttttggtacccgattat 23774201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 8 - 364
Target Start/End: Complemental strand, 23754530 - 23754168
Alignment:
Q  8 tgtggaacccttccattagaaaattcaaggaattgcccccatttgaattgcaacatactggttataatcttcagatgcatggcttcggccatgatcctat 107  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||    
T  23754530 tgtggaacccttccattagaaaattcaaggaattgcccccacttgaattgcaacatgctggttataattttcagatgcacggcttcggccatgatcctat 23754431  T
Q  108 ttctgatcattacaaggtggtggttgtttttcgggataataacaaaactgatgtaaagt-ggttcataatgtgggtaccaatttctggaaagacattaaa 206  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||| ||||||||||||||||||||||||    
T  23754430 ttctgataattacaaggtggtggttgtttttcgggataataacaaaactgatgtaaaggcggttcataatgcggggaccaatttctggaaagacattaaa 23754331  T
Q  207 gagacgttccactatgat-cagttcattgtggagcagaaatctggaaaatatgtgaatggcactattaattggttgg-cttctcaagattatggtaaaag 304  Q
    ||||||||||| |||||| | ||||||||||||||| ||||| |||||| ||||||||||||| || |||||||||| ||||  |||| ||  | ||| |    
T  23754330 gagacgttccaatatgattcggttcattgtggagcaaaaatcgggaaaaaatgtgaatggcacgataaattggttgggcttccaaagaataaagaaaagg 23754231  T
Q  305 tcaaagttttatt-gcttcttttgatttgggaaaagagt-cttataaaaaa-gttttgctacc 364  Q
     ||| |||||||| | ||||||||||| |||||| |||| |||| |||||| |||||||||||    
T  23754230 gcaacgttttatttgtttcttttgattggggaaacgagttcttaaaaaaaaagttttgctacc 23754168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 385 - 506
Target Start/End: Complemental strand, 23766975 - 23766854
Alignment:
Q  385 tagattcacgtactttgcacttgagtgttttcgggaattgtttgtgctggatttctagtaatgatgtttggataatgaaggaatatgggatgaaagcgtc 484  Q
    ||||||| | |||||||||||||||| ||| | ||||||||||||||    ||||| |||||||||||||||| ||||| |||||||| |  |||| |||    
T  23766975 tagattcgcatactttgcacttgagtttttgcaggaattgtttgtgcctcgtttctggtaatgatgtttggattatgaaagaatatggaaataaagagtc 23766876  T
Q  485 ttggactaaattgttcactatt 506  Q
    ||||||||||||||||||||||    
T  23766875 ttggactaaattgttcactatt 23766854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 385 - 506
Target Start/End: Complemental strand, 23816823 - 23816702
Alignment:
Q  385 tagattcacgtactttgcacttgagtgttttcgggaattgtttgtgctggatttctagtaatgatgtttggataatgaaggaatatgggatgaaagcgtc 484  Q
    ||||||| | |||||||||||||||| ||| | ||||||||||||||    ||||| |||||||||||||||| ||||| |||||||| |  |||| |||    
T  23816823 tagattcgcatactttgcacttgagtttttgcaggaattgtttgtgcctcgtttctggtaatgatgtttggattatgaaagaatatggaaataaagagtc 23816724  T
Q  485 ttggactaaattgttcactatt 506  Q
    ||||||||||||||||||||||    
T  23816723 ttggactaaattgttcactatt 23816702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 882 - 954
Target Start/End: Complemental strand, 23780554 - 23780483
Alignment:
Q  882 ttcatttatttgtttgttaaagatttttattatctcttcatgcattattgcatttcaatttatataattccca 954  Q
    ||||| |||||||||||||||| ||||||||||||| |||||||||||||||||| | |||||||| ||||||    
T  23780554 ttcatatatttgtttgttaaaggtttttattatctcctcatgcattattgcattt-agtttatatagttccca 23780483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 882 - 954
Target Start/End: Complemental strand, 23867507 - 23867436
Alignment:
Q  882 ttcatttatttgtttgttaaagatttttattatctcttcatgcattattgcatttcaatttatataattccca 954  Q
    ||||| |||||||||||||||| ||||||||||||| |||||||||||||||||| | |||||||| ||||||    
T  23867507 ttcatatatttgtttgttaaaggtttttattatctcctcatgcattattgcattt-agtttatatagttccca 23867436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 867 - 937
Target Start/End: Original strand, 23687221 - 23687291
Alignment:
Q  867 gaaattgtagttattttcatttatttgtttgttaaagatttttattatctcttcatgcattattgcatttc 937  Q
    |||||||||||||||||||  ||||||||||| |||| ||| | |||||||  ||||||||||||||||||    
T  23687221 gaaattgtagttattttcacctatttgtttgtaaaaggtttatgttatctcagcatgcattattgcatttc 23687291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 867 - 937
Target Start/End: Original strand, 23737202 - 23737272
Alignment:
Q  867 gaaattgtagttattttcatttatttgtttgttaaagatttttattatctcttcatgcattattgcatttc 937  Q
    |||||||||||||||||||  ||||||||||| |||| ||| | |||||||  ||||||||||||||||||    
T  23737202 gaaattgtagttattttcacctatttgtttgtaaaaggtttatgttatctcagcatgcattattgcatttc 23737272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 607 - 897
Target Start/End: Complemental strand, 23766762 - 23766469
Alignment:
Q  607 ttttttacaattctataaatggctttgtaaagttttct---tttcagtttgaatccatcctagaagtctgcattgaaagtttgatatcaccttgttctta 703  Q
    ||||||||||||||||| |||| | | |||||||  ||   ||||||||||||  || |  ||| |||||| |||| || ||||||||||||||||||||    
T  23766762 ttttttacaattctatagatggttctttaaagttccctcggtttcagtttgaaagcacctcagaggtctgcgttgagagcttgatatcaccttgttctta 23766663  T
Q  704 atgttagaatgtcgtagtgatgctatatcgcttgaacatgagattcaac-taaaaactatatttt--aatttatgtttatgatatttattttgtacttg- 799  Q
    |||||| |||||  | |||||| |||  |  |||||||||||||||||| || ||||||||| ||  ||||| |||  |||   | ||| |||||||||     
T  23766662 atgttaaaatgtaat-gtgatgatatgccatttgaacatgagattcaacatagaaactatatcttaaaatttgtgtcaatg--gtgtatcttgtacttgt 23766566  T
Q  800 -ttctgattattagctactt-catggatcattattaattaatggtcatcttaatctgtagcttgatagagaaattgtagttattttcatttatttgtttg 897  Q
     || | |||||||| |||||  ||   | |||||||||||| ||||||||||||||  || |||||| ||||||||| ||||||||||  ||||||||||    
T  23766565 tttttcattattagttacttgtat---tgattattaattaaaggtcatcttaatctacagtttgataaagaaattgttgttattttcacctatttgtttg 23766469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 607 - 897
Target Start/End: Complemental strand, 23816610 - 23816317
Alignment:
Q  607 ttttttacaattctataaatggctttgtaaagttttct---tttcagtttgaatccatcctagaagtctgcattgaaagtttgatatcaccttgttctta 703  Q
    ||||||||||||||||| |||| | | |||||||  ||   ||||||||||||  || |  ||| |||||| |||| || ||||||||||||||||||||    
T  23816610 ttttttacaattctatagatggttctttaaagttccctcggtttcagtttgaaagcacctcagaggtctgcgttgagagcttgatatcaccttgttctta 23816511  T
Q  704 atgttagaatgtcgtagtgatgctatatcgcttgaacatgagattcaac-taaaaactatatttt--aatttatgtttatgatatttattttgtacttg- 799  Q
    |||||| |||||  | |||||| |||  |  |||||||||||||||||| || ||||||||| ||  ||||| |||  |||   | ||| |||||||||     
T  23816510 atgttaaaatgtaat-gtgatgatatgccatttgaacatgagattcaacatagaaactatatcttaaaatttgtgtcaatg--gtgtatcttgtacttgt 23816414  T
Q  800 -ttctgattattagctactt-catggatcattattaattaatggtcatcttaatctgtagcttgatagagaaattgtagttattttcatttatttgtttg 897  Q
     || | |||||||| |||||  ||   | |||||||||||| ||||||||||||||  || |||||| ||||||||| ||||||||||  ||||||||||    
T  23816413 tttttcattattagttacttgtat---tgattattaattaaaggtcatcttaatctacagtttgataaagaaattgttgttattttcacctatttgtttg 23816317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 439 - 515
Target Start/End: Original strand, 11081805 - 11081881
Alignment:
Q  439 ctagtaatgatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcactattcctttcatg 515  Q
    ||||| ||||||||||| | |||||||| ||||| |  |||| |||||||||||||||||| |||||||||| ||||    
T  11081805 ctagtgatgatgtttgggttatgaaggagtatggaaataaagagtcttggactaaattgtttactattccttacatg 11081881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 41973980 - 41973941
Alignment:
Q  8 tgtggaacccttccattagaaaattcaaggaattgccccc 47  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  41973980 tgtggaacccttccactagaaaattcaaggaattgccccc 41973941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 447 - 496
Target Start/End: Original strand, 20292995 - 20293044
Alignment:
Q  447 gatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaatt 496  Q
    ||||||||||| |||||||||||||| || |||| |||||||||||||||    
T  20292995 gatgtttggattatgaaggaatatggaattaaagagtcttggactaaatt 20293044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 778 - 840
Target Start/End: Complemental strand, 16947896 - 16947834
Alignment:
Q  778 tatgatatttattttgtacttgttctgattattagctacttcatggatcattattaattaatg 840  Q
    |||| ||||||||| ||||||||||| || ||| |  ||||||||||||||| ||||||||||    
T  16947896 tatgttatttatttcgtacttgttctaatcattggtgacttcatggatcattgttaattaatg 16947834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 447 - 496
Target Start/End: Original strand, 20301443 - 20301492
Alignment:
Q  447 gatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaatt 496  Q
    ||||||||||| |||||||||||||  || |||| |||||||||||||||    
T  20301443 gatgtttggattatgaaggaatatgcaattaaagagtcttggactaaatt 20301492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 447 - 496
Target Start/End: Original strand, 20305856 - 20305905
Alignment:
Q  447 gatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaatt 496  Q
    ||||| ||||| |||||||||||||| || |||| |||||||||||||||    
T  20305856 gatgtctggattatgaaggaatatggaattaaagagtcttggactaaatt 20305905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 447 - 496
Target Start/End: Original strand, 20310260 - 20310309
Alignment:
Q  447 gatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaatt 496  Q
    ||||| ||||| |||||||||||||| || |||| |||||||||||||||    
T  20310260 gatgtctggattatgaaggaatatggaattaaagagtcttggactaaatt 20310309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 9e-27; HSPs: 55)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 9e-27
Query Start/End: Original strand, 672 - 899
Target Start/End: Complemental strand, 1940399 - 1940176
Alignment:
Q  672 tgcattgaaagtttgatatcaccttgttcttaatgttagaatgtcgtagtgatgctatatcgcttgaacatgagattcaactaaaaactatattttaatt 771  Q
    |||||||| ||||||||||||||||||||||| || || ||||| |  ||| | ||||||| | |||  |||||| | ||||| |   ||||| ||||||    
T  1940399 tgcattgagagtttgatatcaccttgttcttagtgctataatgtagacgtggttctatatcacatgagaatgagactaaactagactttatatgttaatt 1940300  T
Q  772 tatgtttatgatatttattttgtacttgttctgattattagctacttcatggatcattattaattaatggtcatcttaatctgtagcttgatagagaaat 871  Q
    | |||||||| ||||| |||| || |||||||||||||| | |||||||||||||||| | || |||||  ||| | ||| ||||||||    |||||||    
T  1940299 tctgtttatggtatttgttttttatttgttctgattattggttacttcatggatcattgtcaagtaatgtccatttgaatatgtagctt----gagaaat 1940204  T
Q  872 tgtagttattttcatttatttgtttgtt 899  Q
    |||||||||||| | |||||||||||||    
T  1940203 tgtagttatttttacttatttgtttgtt 1940176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 676 - 834
Target Start/End: Original strand, 2932153 - 2932311
Alignment:
Q  676 ttgaaagtttgatatcaccttgttcttaatgttagaatgtcgtagtgatgctatatcgcttgaacatgagattcaactaaaaactatattttaatttatg 775  Q
    |||| |||||||||||||||||||||||||| |||||||  |  |||  |||||||| |||||   ||||| | |||||||| || ||| | ||||| |     
T  2932153 ttgagagtttgatatcaccttgttcttaatgctagaatgcagatgtggggctatatcacttgagagtgagactaaactaaaacctttatgtcaatttcta 2932252  T
Q  776 tttatgatatttattttgtacttgttctgattattagctacttcatggatcattattaa 834  Q
    |||| |||||||||||||||||||||||||| ||| | |||||||||||| ||| ||||    
T  2932253 tttaggatatttattttgtacttgttctgatgattggttacttcatggattattgttaa 2932311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 649 - 800
Target Start/End: Original strand, 997784 - 997935
Alignment:
Q  649 agtttgaatccatcctagaagtctgcattgaaagtttgatatcaccttgttcttaatgttagaatgtcgtagtgatgctatatcgcttgaacatgagatt 748  Q
    |||||||| ||| || |||||||||| |||| ||||| ||||| | || ||||||||| ||| |||| |  | | |||||| || |||||  |||| |||    
T  997784 agtttgaacccaacccagaagtctgcgttgagagtttaatatcccttttttcttaatgctagtatgttgatgaggtgctatgtcacttgagtatgatatt 997883  T
Q  749 caactaaaaactatattttaatttatgtttatgatatttattttgtacttgt 800  Q
     ||||| |  |||||| |||||||||||||||||||||||||||||||||||    
T  997884 taactagagcctatatgttaatttatgtttatgatatttattttgtacttgt 997935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 760 - 822
Target Start/End: Original strand, 1027798 - 1027860
Alignment:
Q  760 tatattttaatttatgtttatgatatttattttgtacttgttctgattattagctacttcatg 822  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||||| | |||||||||    
T  1027798 tatatgttaatttatgtttatgatatttattttgtacttgttctcattattggttacttcatg 1027860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 665 - 841
Target Start/End: Original strand, 989623 - 989798
Alignment:
Q  665 agaagtctgcattgaaagtttgatatcaccttgttcttaatgttagaatgtcgtagtgatgctatatcgcttgaacatgagattcaactaaaaactatat 764  Q
    ||||||||||||||| ||||| ||||||||||||| |||||||||   ||| |  | | ||| ||    ||||| ||||||||| ||||| || | ||||    
T  989623 agaagtctgcattgagagtttaatatcaccttgtttttaatgttaacttgtagatgcggtgcaatgagacttgagcatgagatttaactagaacccatat 989722  T
Q  765 tttaatttatgtttatgatatttattttgtacttgttctgattattagctacttcatggatcattattaattaatgg 841  Q
     ||||||||||| ||||||||| |||||||| |||  ||||||||| | ||||||||| |||||| ||||| |||||    
T  989723 gttaatttatgtctatgatattcattttgtatttg-cctgattattggttacttcatgaatcattgttaatcaatgg 989798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 665 - 829
Target Start/End: Original strand, 1022695 - 1022859
Alignment:
Q  665 agaagtctgcattgaaagtttgatatcaccttgttcttaatgttagaatgtcgtagtgatgctatatcgcttgaacatgagattcaactaaaaactatat 764  Q
    |||||| ||| |||| ||||| ||||| |||||| ||||||| |||  ||| |  | | |||||| || ||||| ||||| ||  ||||  || ||||||    
T  1022695 agaagtgtgcgttgagagtttaatatcgccttgtccttaatgctagtttgtagatgaggtgctatgtcccttgagcatgaaatctaactggaacctatat 1022794  T
Q  765 tttaatttatgtttatgatatttattttgtacttgttctgattattagctacttcatggatcatt 829  Q
     |||||||| ||||||||||||||||||| ||||||||||||||||   ||||||||| ||||||    
T  1022795 gttaatttacgtttatgatatttattttgaacttgttctgattattgattacttcatgaatcatt 1022859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 649 - 800
Target Start/End: Original strand, 1014174 - 1014325
Alignment:
Q  649 agtttgaatccatcctagaagtctgcattgaaagtttgatatcaccttgttcttaatgttagaatgtcgtagtgatgctatatcgcttgaacatgagatt 748  Q
    |||||||| ||| || |||||||||| |||| ||||| ||||| | || ||||||||| ||| |||| |  | | |||||| || |||||  |||| |||    
T  1014174 agtttgaacccaacccagaagtctgcgttgagagtttaatatcccttttttcttaatgctagtatgttgatgaggtgctatgtcacttgagtatgatatt 1014273  T
Q  749 caactaaaaactatattttaatttatgtttatgatatttattttgtacttgt 800  Q
     ||||| |  |||||| ||||||||||| |||||||||||||||||||||||    
T  1014274 taactagagcctatatgttaatttatgtatatgatatttattttgtacttgt 1014325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 759 - 829
Target Start/End: Original strand, 1007761 - 1007831
Alignment:
Q  759 ctatattttaatttatgtttatgatatttattttgtacttgttctgattattagctacttcatggatcatt 829  Q
    |||||| |||||||| ||||||||||||||||||| ||||||||||||||||   ||||||||| ||||||    
T  1007761 ctatatgttaatttacgtttatgatatttattttgaacttgttctgattattgattacttcatgaatcatt 1007831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 445 - 515
Target Start/End: Complemental strand, 4142187 - 4142117
Alignment:
Q  445 atgatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcactattcctttcatg 515  Q
    ||||||||||| | |||||||||||||| |  |||| ||||||||||||||||||||||||||||| ||||    
T  4142187 atgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatg 4142117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 676 - 834
Target Start/End: Complemental strand, 1889408 - 1889244
Alignment:
Q  676 ttgaaagtttgatatcaccttgttcttaatgttagaatgtcgtagtgatgctatatcgcttgaacatgagattcaactaaaaactatattttaatttatg 775  Q
    |||| |||||||||||||||||||||||||| |||||||| |  ||| |||||| || |||||   ||||| | | |||||| || ||| | ||||| ||    
T  1889408 ttgagagtttgatatcaccttgttcttaatgctagaatgtagatgtggtgctatgtcacttgagagtgagactaatctaaaacctttatgtcaatttttg 1889309  T
Q  776 ttta------tgatatttattttgtacttgttctgattattagctacttcatggatcattattaa 834  Q
    ||||      | ||||||||||||||||||||||||||||| | ||||||| |||| ||| ||||    
T  1889308 tttaggatatttatatttattttgtacttgttctgattattggttacttcagggattattgttaa 1889244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 405 - 515
Target Start/End: Original strand, 3754558 - 3754668
Alignment:
Q  405 ttgagtgttttcgggaattgtttgtgctggatttctagtaatgatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcacta 504  Q
    |||||||||||  || |||| ||||||  || |||| ||  |||||||||| | |||||||||||||| |  |||| |||||||||||||||||| ||||    
T  3754558 ttgagtgttttgagggattgcttgtgcgtgacttctggtgttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaattgtttacta 3754657  T
Q  505 ttcctttcatg 515  Q
    |||||| ||||    
T  3754658 ttccttgcatg 3754668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 1941070 - 1941033
Alignment:
Q  8 tgtggaacccttccattagaaaattcaaggaattgccc 45  Q
    ||||||||||||||||||||||||||||||||||||||    
T  1941070 tgtggaacccttccattagaaaattcaaggaattgccc 1941033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 666 - 706
Target Start/End: Original strand, 956612 - 956652
Alignment:
Q  666 gaagtctgcattgaaagtttgatatcaccttgttcttaatg 706  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  956612 gaagtctgctttgaaagtttgatatcaccttgttcttaatg 956652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 445 - 505
Target Start/End: Complemental strand, 4157997 - 4157937
Alignment:
Q  445 atgatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcactat 505  Q
    ||||||||||| | |||||||||||||| |  |||| ||||||||||||||||||||||||    
T  4157997 atgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactat 4157937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 667 - 799
Target Start/End: Complemental strand, 7431879 - 7431747
Alignment:
Q  667 aagtctgcattgaaagtttgatatcaccttgttcttaatgttagaatgtcgtagtgatgctatatcgcttgaacatgagattcaactaaaaactatattt 766  Q
    |||| |||||||| ||||||||||| |||||||||||  | ||| |||| |  |   ||||||||| ||| | ||||||||||||  | || |||| | |    
T  7431879 aagtttgcattgagagtttgatatctccttgttcttaccgctaggatgtagatgctgtgctatatcacttaagcatgagattcaaaaataacctatgtgt 7431780  T
Q  767 taatttatgtttatgatatttattttgtacttg 799  Q
    ||||||||||||||| |||||||||| ||||||    
T  7431779 taatttatgtttatgctatttattttttacttg 7431747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 391 - 506
Target Start/End: Original strand, 956325 - 956440
Alignment:
Q  391 cacgtactttgcacttgagtgttttcgggaattgtttgtgctggatttctagtaatgatgtttggataatgaaggaatatgggatgaaagcgtcttggac 490  Q
    ||||| ||||| |||||||||||||| || |||| ||||||  ||||| | ||   ||||||||||| |||||||||||||| |  |||| |||||||      
T  956325 cacgttctttgaacttgagtgttttcagggattgcttgtgcatgatttttggttgcgatgtttggattatgaaggaatatggaaaaaaagagtcttggca 956424  T
Q  491 taaattgttcactatt 506  Q
    ||||||||||| ||||    
T  956425 taaattgttcattatt 956440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 1004034 - 1004073
Alignment:
Q  8 tgtggaacccttccattagaaaattcaaggaattgccccc 47  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  1004034 tgtggaacccttccattagaaaattaaaggaattgccccc 1004073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 1022031 - 1022070
Alignment:
Q  8 tgtggaacccttccattagaaaattcaaggaattgccccc 47  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  1022031 tgtggaacccttccattagaaaattaaaggaattgccccc 1022070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 1931576 - 1931525
Alignment:
Q  86 atggcttcggccatgatcctatttctgatcattacaaggtggtggttgtttt 137  Q
    ||||||||  ||||||||||||| ||||| ||||||||||||||||||||||    
T  1931576 atggcttcatccatgatcctattactgataattacaaggtggtggttgtttt 1931525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 404 - 510
Target Start/End: Complemental strand, 2686409 - 2686300
Alignment:
Q  404 cttgagtgttttcgggaattgtttgtgctggatttctagtaatgatgtttgg---ataatgaaggaatatgggatgaaagcgtcttggactaaattgttc 500  Q
    |||| |||||||  || |||||||||||| ||| | | || |||||||||||   || |||||||||||||| |  |||| |||||||| ||||||||||    
T  2686409 cttgggtgttttgagggattgtttgtgcttgatctgtggtgatgatgtttgggttattatgaaggaatatggaaaaaaagagtcttggaataaattgttc 2686310  T
Q  501 actattcctt 510  Q
    ||||||||||    
T  2686309 actattcctt 2686300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 676 - 778
Target Start/End: Complemental strand, 1890874 - 1890772
Alignment:
Q  676 ttgaaagtttgatatcaccttgttcttaatgttagaatgtcgtagtgatgctatatcgcttgaacatgagattcaactaaaaactatattttaatttatg 775  Q
    |||| ||||||||||| |||||||||||||| |||||||| |  ||| | |||| || |||||   ||||||| |||||||| |||||||| ||||| ||    
T  1890874 ttgagagtttgatatcgccttgttcttaatgctagaatgtagatgtggtactatgtcacttgagagtgagattaaactaaaacctatatttcaatttctg 1890775  T
Q  776 ttt 778  Q
    |||    
T  1890774 ttt 1890772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 445 - 503
Target Start/End: Complemental strand, 2696785 - 2696727
Alignment:
Q  445 atgatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcact 503  Q
    ||||||||||||| |||||||||||||| |  |||| |||||||| |||||||||||||    
T  2696785 atgatgtttggattatgaaggaatatggaaataaagagtcttggattaaattgttcact 2696727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 445 - 506
Target Start/End: Original strand, 1007459 - 1007520
Alignment:
Q  445 atgatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcactatt 506  Q
    ||||||||||| |||||||||||||||| |  || | ||| |||||||||||||||||||||    
T  1007459 atgatgtttgggtaatgaaggaatatggaaataacgagtcctggactaaattgttcactatt 1007520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 445 - 506
Target Start/End: Original strand, 1022487 - 1022548
Alignment:
Q  445 atgatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcactatt 506  Q
    ||||||||||| |||||||||||||||| |  || | ||| |||||||||||||||||||||    
T  1022487 atgatgtttgggtaatgaaggaatatggaaataacgagtcatggactaaattgttcactatt 1022548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 1891561 - 1891524
Alignment:
Q  8 tgtggaacccttccattagaaaattcaaggaattgccc 45  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  1891561 tgtggaacccttccattagaaaatttaaggaattgccc 1891524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 1898168 - 1898131
Alignment:
Q  8 tgtggaacccttccattagaaaattcaaggaattgccc 45  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  1898168 tgtggaacccttccattcgaaaattcaaggaattgccc 1898131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 1907614 - 1907577
Alignment:
Q  8 tgtggaacccttccattagaaaattcaaggaattgccc 45  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  1907614 tgtggaacccttccattcgaaaattcaaggaattgccc 1907577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 666 - 715
Target Start/End: Complemental strand, 1936806 - 1936757
Alignment:
Q  666 gaagtctgcattgaaagtttgatatcaccttgttcttaatgttagaatgt 715  Q
    ||||||||| |||| ||||||||||||||||||| |||||| ||||||||    
T  1936806 gaagtctgcgttgagagtttgatatcaccttgtttttaatgctagaatgt 1936757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 2931472 - 2931509
Alignment:
Q  8 tgtggaacccttccattagaaaattcaaggaattgccc 45  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  2931472 tgtggaacccttccattcgaaaattcaaggaattgccc 2931509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 445 - 510
Target Start/End: Original strand, 3746006 - 3746071
Alignment:
Q  445 atgatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcactattcctt 510  Q
    ||||| ||||||| |||||||||||||  | | ||| |||||||||||||||||| ||||||||||    
T  3746006 atgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgttgactattcctt 3746071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 665 - 710
Target Start/End: Original strand, 12133312 - 12133357
Alignment:
Q  665 agaagtctgcattgaaagtttgatatcaccttgttcttaatgttag 710  Q
    ||||||||||| | | ||||||||||||||||||||||||||||||    
T  12133312 agaagtctgcactaagagtttgatatcaccttgttcttaatgttag 12133357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 436 - 516
Target Start/End: Original strand, 989385 - 989465
Alignment:
Q  436 tttctagtaatgatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcactattcctttcatgc 516  Q
    ||||| || ||||||||||| ||||||| || || || |  |||| ||||||||||||||||||||||||| ||| |||||    
T  989385 tttctggtgatgatgtttgggtaatgaaagagtacggaaataaagagtcttggactaaattgttcactatttcttacatgc 989465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 968235 - 968274
Alignment:
Q  8 tgtggaacccttccattagaaaattcaaggaattgccccc 47  Q
    ||||||| |||||||||||||||||||| |||||||||||    
T  968235 tgtggaatccttccattagaaaattcaaagaattgccccc 968274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 676 - 715
Target Start/End: Complemental strand, 1897487 - 1897448
Alignment:
Q  676 ttgaaagtttgatatcaccttgttcttaatgttagaatgt 715  Q
    |||| |||||||||||||||||||||||||| ||||||||    
T  1897487 ttgagagtttgatatcaccttgttcttaatgctagaatgt 1897448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 676 - 715
Target Start/End: Complemental strand, 1906933 - 1906894
Alignment:
Q  676 ttgaaagtttgatatcaccttgttcttaatgttagaatgt 715  Q
    |||| |||||||||||||||||||||||||| ||||||||    
T  1906933 ttgagagtttgatatcaccttgttcttaatgctagaatgt 1906894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 676 - 715
Target Start/End: Complemental strand, 1930985 - 1930946
Alignment:
Q  676 ttgaaagtttgatatcaccttgttcttaatgttagaatgt 715  Q
    |||| |||||||||||||||||||||||||| ||||||||    
T  1930985 ttgagagtttgatatcaccttgttcttaatgctagaatgt 1930946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 1937399 - 1937348
Alignment:
Q  86 atggcttcggccatgatcctatttctgatcattacaaggtggtggttgtttt 137  Q
    |||||||| |||||||||||||| || || |||||||| |||||||||||||    
T  1937399 atggcttcagccatgatcctattactaataattacaagatggtggttgtttt 1937348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 43
Target Start/End: Complemental strand, 1937474 - 1937439
Alignment:
Q  8 tgtggaacccttccattagaaaattcaaggaattgc 43  Q
    ||||||| ||||||||||||||||||||||||||||    
T  1937474 tgtggaatccttccattagaaaattcaaggaattgc 1937439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 345
Target Start/End: Original strand, 12132951 - 12132986
Alignment:
Q  310 gttttattgcttcttttgatttgggaaaagagtctt 345  Q
    ||||||||| ||||||||||||||||||||||||||    
T  12132951 gttttattgtttcttttgatttgggaaaagagtctt 12132986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 676 - 715
Target Start/End: Original strand, 12218280 - 12218319
Alignment:
Q  676 ttgaaagtttgatatcaccttgttcttaatgttagaatgt 715  Q
    |||| |||||||||||||||||||||||||||||| ||||    
T  12218280 ttgagagtttgatatcaccttgttcttaatgttaggatgt 12218319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 447 - 498
Target Start/End: Complemental strand, 37753396 - 37753345
Alignment:
Q  447 gatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgt 498  Q
    ||||||||||| ||| |||||||||| | ||||| |||||||||||||||||    
T  37753396 gatgtttggattatggaggaatatggaaagaaagagtcttggactaaattgt 37753345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 759 - 801
Target Start/End: Complemental strand, 802926 - 802884
Alignment:
Q  759 ctatattttaatttatgtttatgatatttattttgtacttgtt 801  Q
    ||||||||||||||||||||||| ||||| |||| ||||||||    
T  802926 ctatattttaatttatgtttatgttatttcttttttacttgtt 802884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 421 - 503
Target Start/End: Complemental strand, 803295 - 803213
Alignment:
Q  421 attgtttgtgctggatttctagtaatgatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcact 503  Q
    |||| ||||||  ||||||| || ||||||||||| | ||||| |||||||| |  |||| |||||||||||| |||||||||    
T  803295 attgcttgtgcatgatttctggtgatgatgtttgggttatgaaagaatatggaaataaagagtcttggactaagttgttcact 803213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 865 - 899
Target Start/End: Original strand, 900375 - 900409
Alignment:
Q  865 gagaaattgtagttattttcatttatttgtttgtt 899  Q
    ||||||||||||||||||||| |||||||||||||    
T  900375 gagaaattgtagttattttcaattatttgtttgtt 900409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 447 - 509
Target Start/End: Complemental strand, 2644413 - 2644351
Alignment:
Q  447 gatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcactattcct 509  Q
    ||||||||||| |||||||| ||||| |   ||| ||||||||||||||||| ||||||||||    
T  2644413 gatgtttggattatgaaggagtatggaaatcaagagtcttggactaaattgtacactattcct 2644351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 447 - 509
Target Start/End: Complemental strand, 2659203 - 2659141
Alignment:
Q  447 gatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcactattcct 509  Q
    ||||||||||| |||||||| ||||| |   ||| ||||||||||||||||| ||||||||||    
T  2659203 gatgtttggattatgaaggagtatggaaatcaagagtcttggactaaattgtacactattcct 2659141  T

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Target: chr3; HSP #47
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 447 - 509
Target Start/End: Complemental strand, 7334290 - 7334228
Alignment:
Q  447 gatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcactattcct 509  Q
    ||||||||||| |||||||| || || |  |||| ||||||||||||||||| ||||||||||    
T  7334290 gatgtttggatcatgaaggactacggaaataaagagtcttggactaaattgtacactattcct 7334228  T

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Target: chr3; HSP #48
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 681 - 715
Target Start/End: Complemental strand, 7427398 - 7427364
Alignment:
Q  681 agtttgatatcaccttgttcttaatgttagaatgt 715  Q
    |||||||||||||||||||||||||||||| ||||    
T  7427398 agtttgatatcaccttgttcttaatgttaggatgt 7427364  T

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Target: chr3; HSP #49
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 46
Target Start/End: Original strand, 12132625 - 12132659
Alignment:
Q  12 gaacccttccattagaaaattcaaggaattgcccc 46  Q
    ||||||||||||||||||||||||||| |||||||    
T  12132625 gaacccttccattagaaaattcaaggagttgcccc 12132659  T

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Target: chr3; HSP #50
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 666 - 707
Target Start/End: Complemental strand, 783631 - 783590
Alignment:
Q  666 gaagtctgcattgaaagtttgatatcaccttgttcttaatgt 707  Q
    ||||||| | |||| |||||||||||||||||||||||||||    
T  783631 gaagtctacgttgagagtttgatatcaccttgttcttaatgt 783590  T

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Target: chr3; HSP #51
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 665 - 706
Target Start/End: Complemental strand, 803018 - 802977
Alignment:
Q  665 agaagtctgcattgaaagtttgatatcaccttgttcttaatg 706  Q
    |||| |||||||||| || |||||||||||||||||||||||    
T  803018 agaaatctgcattgagagcttgatatcaccttgttcttaatg 802977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 445 - 510
Target Start/End: Complemental strand, 2678452 - 2678387
Alignment:
Q  445 atgatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcactattcctt 510  Q
    ||||||||||| | |||||  ||||||| |  |||| ||| |||||||||||||||||||||||||    
T  2678452 atgatgtttgggttatgaaacaatatggaaaaaaagagtcatggactaaattgttcactattcctt 2678387  T

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Target: chr3; HSP #53
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 311 - 352
Target Start/End: Complemental strand, 2678583 - 2678542
Alignment:
Q  311 ttttattgcttcttttgatttgggaaaagagtcttataaaaa 352  Q
    |||||||| |||||||||||||| ||||||||||||| ||||    
T  2678583 ttttattgtttcttttgatttggcaaaagagtcttatcaaaa 2678542  T

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Target: chr3; HSP #54
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 2697241 - 2697204
Alignment:
Q  8 tgtggaacccttccattagaaaattcaaggaattgccc 45  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  2697241 tgtggaacccttcaattagaaaatttaaggaattgccc 2697204  T

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Target: chr3; HSP #55
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 447 - 496
Target Start/End: Original strand, 13498224 - 13498273
Alignment:
Q  447 gatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaatt 496  Q
    ||||||||||| |||||||||||||| |  |||| |||||||||||||||    
T  13498224 gatgtttggattatgaaggaatatggaaataaagagtcttggactaaatt 13498273  T

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Target: chr8 (Bit Score: 46; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 8 - 137
Target Start/End: Original strand, 19727420 - 19727549
Alignment:
Q  8 tgtggaacccttccattagaaaattcaaggaattgcccccatttgaattgcaacatactggttataatcttcagatgcatggcttcggccatgatcctat 107  Q
    |||||||||||||| |||||||||||||||| ||||||||  |||||  || ||| |||  || | |   |  |||||||||||| |||||||||||||     
T  19727420 tgtggaacccttccgttagaaaattcaaggacttgccccctcttgaaaagccacaaactttttgtcaaactatgatgcatggctttggccatgatcctaa 19727519  T
Q  108 ttctgatcattacaaggtggtggttgtttt 137  Q
    | ||||||||||||||||||||||| ||||    
T  19727520 tactgatcattacaaggtggtggttatttt 19727549  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 31144893 - 31144856
Alignment:
Q  8 tgtggaacccttccattagaaaattcaaggaattgccc 45  Q
    ||||||||||||||||||||||||||||||||||||||    
T  31144893 tgtggaacccttccattagaaaattcaaggaattgccc 31144856  T

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Target: chr4 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 759 - 822
Target Start/End: Complemental strand, 22671874 - 22671811
Alignment:
Q  759 ctatattttaatttatgtttatgatatttattttgtacttgttctgattattagctacttcatg 822  Q
    |||||| |||||||||||||||||||||||||||||| ||||||| |||||| | |||||||||    
T  22671874 ctatatgttaatttatgtttatgatatttattttgtaattgttctcattattggttacttcatg 22671811  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 435 - 503
Target Start/End: Complemental strand, 20019835 - 20019767
Alignment:
Q  435 atttctagtaatgatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcact 503  Q
    |||||| |||||||||||||| | |||||||||||||| ||  ||| ||||||||||||||||||||||    
T  20019835 atttctggtaatgatgtttgggtcatgaaggaatatggaattcaagagtcttggactaaattgttcact 20019767  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 661 - 794
Target Start/End: Complemental strand, 20019600 - 20019473
Alignment:
Q  661 tcctagaagtctgcattgaaagtttgatatcaccttgttcttaatgttagaatgtcgtagtgatgctatatcgcttgaacatgagattcaactaaaaact 760  Q
    |||||||||| ||  |||| ||||||||||||||||||| |||||| ||| |||| ||      ||||| || ||| | ||||||||| ||||| || ||    
T  20019600 tcctagaagtatgtgttgagagtttgatatcaccttgtttttaatgctaggatgttgt------gctatgtcacttcagcatgagatttaactacaacct 20019507  T
Q  761 atattttaatttatgtttatgatatttattttgt 794  Q
    ||||||||||||||||| ||| | ||||||||||    
T  20019506 atattttaatttatgttaatgttttttattttgt 20019473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 435 - 503
Target Start/End: Complemental strand, 20016249 - 20016180
Alignment:
Q  435 atttctagtaatgatgttt-ggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcact 503  Q
    |||||| |||||||||||| |||| |||||||||||||| ||  ||| ||||||||||||||||||||||    
T  20016249 atttctggtaatgatgttttggatcatgaaggaatatggaattcaagagtcttggactaaattgttcact 20016180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 20020284 - 20020248
Alignment:
Q  8 tgtggaacccttccattagaaaattcaaggaattgcc 44  Q
    |||||||||||||||||||||||||||||||||||||    
T  20020284 tgtggaacccttccattagaaaattcaaggaattgcc 20020248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 393 - 520
Target Start/End: Complemental strand, 22672232 - 22672105
Alignment:
Q  393 cgtactttgcacttgagtgttttcgggaattgtttgtgctggatttctagtaatgatgtttggataatgaaggaatatgggatgaaagcgtcttggacta 492  Q
    |||| ||||| |||||||||| || || |||| |||  || | ||||| || | || |||||| |||||||||||||||| |  || |  ||||||||||    
T  22672232 cgtattttgctcttgagtgttctcagggattgcttgatcttgttttctggtgacgacgtttgggtaatgaaggaatatggaaataaggaatcttggacta 22672133  T
Q  493 aattgttcactattcctttcatgccatc 520  Q
    |||||||||||||| ||| |||||||||    
T  22672132 aattgttcactatttcttacatgccatc 22672105  T

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Target: chr2 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 665 - 753
Target Start/End: Original strand, 33038434 - 33038522
Alignment:
Q  665 agaagtctgcattgaaagtttgatatcaccttgttcttaatgttagaatgtcgtagtgatgctatatcgcttgaacatgagattcaact 753  Q
    |||||||| |||||||||| |||||||||||||||||||||||||| |||| |  |  ||| ||| || ||||||||||||||| ||||    
T  33038434 agaagtctacattgaaagtctgatatcaccttgttcttaatgttaggatgtagatgctatgatatgtcacttgaacatgagattaaact 33038522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 863 - 900
Target Start/End: Original strand, 36577819 - 36577856
Alignment:
Q  863 tagagaaattgtagttattttcatttatttgtttgtta 900  Q
    ||||||||||||||||||||||||||||||||||||||    
T  36577819 tagagaaattgtagttattttcatttatttgtttgtta 36577856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 665 - 707
Target Start/End: Original strand, 33026902 - 33026944
Alignment:
Q  665 agaagtctgcattgaaagtttgatatcaccttgttcttaatgt 707  Q
    |||||||| |||||||||| |||||||||||||||||||||||    
T  33026902 agaagtctacattgaaagtctgatatcaccttgttcttaatgt 33026944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 665 - 710
Target Start/End: Complemental strand, 24417289 - 24417244
Alignment:
Q  665 agaagtctgcattgaaagtttgatatcaccttgttcttaatgttag 710  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||    
T  24417289 agaagtctacattgaaagtctgatatcaccttgttcttaatgttag 24417244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 676 - 715
Target Start/End: Complemental strand, 9819645 - 9819606
Alignment:
Q  676 ttgaaagtttgatatcaccttgttcttaatgttagaatgt 715  Q
    |||| |||||||||||||||||||||||||||||| ||||    
T  9819645 ttgagagtttgatatcaccttgttcttaatgttagtatgt 9819606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 312 - 372
Target Start/End: Complemental strand, 1078361 - 1078301
Alignment:
Q  312 tttattgcttcttttgatttgggaaaagagtcttataaaaaagttttgctacctgattatg 372  Q
    ||||||| ||||||||||||||||||||| |||||| |||| |||||||  ||||||||||    
T  1078361 tttattgtttcttttgatttgggaaaagaatcttatcaaaaggttttgcctcctgattatg 1078301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 46
Target Start/End: Complemental strand, 1078698 - 1078664
Alignment:
Q  12 gaacccttccattagaaaattcaaggaattgcccc 46  Q
    ||||||||||||||||||||||||||| |||||||    
T  1078698 gaacccttccattagaaaattcaaggagttgcccc 1078664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 1288 - 1249
Alignment:
Q  8 tgtggaacccttccattagaaaattcaaggaattgccccc 47  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  1288 tgtggaacccttccactagaaaattcaaggaattgccccc 1249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 33; Significance: 0.000000007; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 667 - 715
Target Start/End: Original strand, 89387 - 89435
Alignment:
Q  667 aagtctgcattgaaagtttgatatcaccttgttcttaatgttagaatgt 715  Q
    |||||| |||||| |||||||||||||||||||||||| ||||| ||||    
T  89387 aagtctacattgagagtttgatatcaccttgttcttaacgttaggatgt 89435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 446 - 515
Target Start/End: Complemental strand, 51381507 - 51381438
Alignment:
Q  446 tgatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcactattcctttcatg 515  Q
    |||| ||||||| ||||| |||||||| |   ||| |||||||||||||||||||| |||||||| ||||    
T  51381507 tgatatttggattatgaaagaatatggaaatgaagagtcttggactaaattgttcagtattccttacatg 51381438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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