View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0834-Insertion-2 (Length: 604)
Name: NF0834-Insertion-2
Description: NF0834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0834-Insertion-2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 577; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 8 - 604
Target Start/End: Original strand, 33235819 - 33236414
Alignment:
| Q |
8 |
caatctacaaagaagaaggttgagctttggccttatgttccatacactatggtggctcatccttatatttcacaagcctatgataagaaagcacctccta |
107 |
Q |
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| T |
33235819 |
caatctacaaagaagaaggttgagctttggccttatgttccatacactatggtggctcatccttatatttcacaagcctatgataagaaagcacctccta |
33235918 |
T |
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| Q |
108 |
atatggttagaaaggttggtgacacttccaacataaaagagtccacctttgatgatagctatgttggaatgttcagtgatgaaaatccaaatgcttgttc |
207 |
Q |
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| T |
33235919 |
atatggttagaaaggttggcgacacttccaacataaaagagtccacctttgatgatagctatgttgaaatgttcagtgatgaaaatccaaatgcttgttc |
33236018 |
T |
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| Q |
208 |
tagtatgtaatcattcattaaaaaatatgtgtgtatgatgattaatttctcaccccttatggtaatcacactttgaggagaaaataatgtaataggtgtg |
307 |
Q |
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| T |
33236019 |
tattatgtaatcattcattaaaa-atatgtgtgtatgatgattaatttctcaccccttatggtaatcacactttgaggagaaaataatgtaataggtgtg |
33236117 |
T |
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| Q |
308 |
taattgaaaaatgagagataaagatatgtgatagaggagtgtagaaattaattaatgtgtaagaaaattagttattatgatctaatactagataataata |
407 |
Q |
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| T |
33236118 |
taattgaaaaatgagagataaagatatgtgatagaggagtgtagaaattaattaatgtgtaagaaaattagttattatgatctaatactagataataata |
33236217 |
T |
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| Q |
408 |
taattttgcatggttttgcatatatactattatatgatgatgattgattgttagggtggttgaaatggaacacacttggcagtgtatagggagttaatag |
507 |
Q |
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| T |
33236218 |
taattttgcatggttttgcatatatactattatatgatgatgattgattgttagggtggttgaaatggaacacacttggcagtgtatagggagttaatag |
33236317 |
T |
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| Q |
508 |
tgttatttttgcatattttccaccattgacctagttttatcctttgtaagtggctatatgtacattccgtgtttggcaggacattgttctgtctttg |
604 |
Q |
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| T |
33236318 |
tgttatttttgcatattttccaccattgacctagttttatcctttgtaagtggctatatgtacattccgtgtttggcaggacattgttctgtctttg |
33236414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 179 - 209
Target Start/End: Complemental strand, 40577029 - 40576999
Alignment:
| Q |
179 |
ttcagtgatgaaaatccaaatgcttgttcta |
209 |
Q |
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| T |
40577029 |
ttcagtgatgaaaatccaaatgcttgttcta |
40576999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 103
Target Start/End: Original strand, 10652856 - 10652926
Alignment:
| Q |
33 |
tttggccttatgttccatacactatggtggctcatccttatatttcacaagcctatgataagaaagcacct |
103 |
Q |
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| T |
10652856 |
tttggccatatattccatacaacttggtggcttatccttatatatctcaagcttatgacaagaaagcacct |
10652926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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