View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0834-Insertion-4 (Length: 478)
Name: NF0834-Insertion-4
Description: NF0834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0834-Insertion-4 |
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| [»] chr6 (4 HSPs) |
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| [»] scaffold1113 (2 HSPs) |
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| [»] scaffold0961 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 447; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 8 - 478
Target Start/End: Original strand, 32684225 - 32684695
Alignment:
| Q |
8 |
taagttttacagttttagtttctttgttcatagttgagtttttaatattaaaggtttttcctctaaaccagcagatctggcagttgaattgtgcgctgaa |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
32684225 |
taagttttacagttttagtttctttgttcatatttgagtttttaatattaagggtttttcctctaaaccagcagatctggcagctgaattgtgcgctgaa |
32684324 |
T |
|
| Q |
108 |
atccaaggctgaatataaagaggaggttgacaatgaccgtaaagaacttcgaagcacaagacctcattgcgttatattgtgatagtcaaagtgtcattta |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32684325 |
atccaaggctgaatataaagaggaggttgacaatgaccgtaaagaacttcgaagcacaagacctcattgcgttatattttgatagtcaaagtgtcattta |
32684424 |
T |
|
| Q |
208 |
cataacatctattgtattcaatgaaagaactaagcatttagaaattgacatatagcttgctgaacaagttacatcataaaacagttggcaaagaaactta |
307 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32684425 |
cataacatctatattattcaatgaaagaactaagcatttagaaattgacatatagcttgctgaacaagttacatcataaaacagttggcaaagaaactta |
32684524 |
T |
|
| Q |
308 |
catctcagtatacttagttggagagcttgtaactaacattccctctcaagattgatgaaaactagctagatcgtgattgcatagacgaaaactacaacta |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32684525 |
catctcagtatacttagttggagagcttgtaactaacattccctctcaagattgatgaaaactagctagatcgtgattgcatagacgaaaactacaacta |
32684624 |
T |
|
| Q |
408 |
tataagatgcatcagtgtatcattttctagttaacatgatcattttctttcttgttcattctctattctga |
478 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32684625 |
tataagatgcatcagtgtatcattttctagttaacatgatcattttctttcttgttcattctctattctga |
32684695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 124 - 435
Target Start/End: Complemental strand, 32560082 - 32559771
Alignment:
| Q |
124 |
aaagaggaggttgacaatgaccgtaaagaacttcgaagcacaagacctcattgcgttatattgtgatagtcaaagtgtcatttacataacatctattgta |
223 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||| |
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| T |
32560082 |
aaagaggaggttgacaatgaccgtaaagaacttcgaagcacaagacctcgttgcgttatattgtgatagtgaaagtgtcatttacataacatgcattgta |
32559983 |
T |
|
| Q |
224 |
ttcaatgaaagaactaagcatttagaaattgacatatagcttgctgaacaagttacatcataaaacagttggcaaagaaacttacatctcagtatactta |
323 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32559982 |
ttcaatgaaagaactaagcatttagaaattgacatatagcttgctgaataagttacatcataaaacagttggcaaagaaacttacatctcagtatactta |
32559883 |
T |
|
| Q |
324 |
gttggagagcttgtaactaacattccctctcaagattgatgaaaactagctagatcgtgattgcatagacgaaaactacaactatataagatgcatcagt |
423 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32559882 |
gttagagagcttgtaactaacattccctctcaagattgatgaaaactagctagatcgtgattgcatagacgaaaactacaactatataagatgcatcagt |
32559783 |
T |
|
| Q |
424 |
gtatcattttct |
435 |
Q |
| |
|
|||||||||||| |
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| T |
32559782 |
gtatcattttct |
32559771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 8 - 161
Target Start/End: Original strand, 32692123 - 32692276
Alignment:
| Q |
8 |
taagttttacagttttagtttctttgttcatagttgagtttttaatattaaaggtttttcctctaaaccagcagatctggcagttgaattgtgcgctgaa |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
32692123 |
taagttttacagttttagtttctttgttcatatttgagtttttaatattaagggtttttcctctaaaccagcagatctggcagctgaattgtgtgctgaa |
32692222 |
T |
|
| Q |
108 |
atccaaggctgaatataaagaggaggttgacaatgaccgtaaagaacttcgaag |
161 |
Q |
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|| ||||| |||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32692223 |
atgcaaggttgaatataaagaggaggttgacaatgaccgtaaagaactttgaag |
32692276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 52
Target Start/End: Original strand, 34114556 - 34114599
Alignment:
| Q |
9 |
aagttttacagttttagtttctttgttcatagttgagtttttaa |
52 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
34114556 |
aagtttcacaattttagtttctttgttcatagttgagtttttaa |
34114599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1113 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: scaffold1113
Description:
Target: scaffold1113; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 62 - 1
Alignment:
| Q |
8 |
taagttttacagttttagtttctttgttcatagttgagtttttaatattaaaggtttttcct |
69 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
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| T |
62 |
taagttttacagttttagtttctttgttcatatttgagtttttaatattaagggtttttcct |
1 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1113; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 81
Target Start/End: Complemental strand, 1871 - 1798
Alignment:
| Q |
9 |
aagttttacagttttagtttctttgttcatagttgagtt-tttaatattaaaggtttttcctctaaaccagcag |
81 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||| |||||| |||| || |||||||||||||||| |
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| T |
1871 |
aagttttacagttttagtttctttgttcatatttgagttctttaatgttaattaattatcctctaaaccagcag |
1798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0961 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0961
Description:
Target: scaffold0961; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 81
Target Start/End: Original strand, 1746 - 1819
Alignment:
| Q |
9 |
aagttttacagttttagtttctttgttcatagttgagtt-tttaatattaaaggtttttcctctaaaccagcag |
81 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| |||||| |||| || |||||||||||||||| |
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| T |
1746 |
aagttttacagttttagtttctttgttcatatttgagttctttaatgttaattaattatcctctaaaccagcag |
1819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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