View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0834_high_10 (Length: 400)
Name: NF0834_high_10
Description: NF0834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0834_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 26 - 388
Target Start/End: Original strand, 37503128 - 37503478
Alignment:
| Q |
26 |
atcagaattttgggaagattttatgatctaagtgcagtttggtagggttggatttcctttgatgtttgaatgtttctctattttgacatattatgttgtt |
125 |
Q |
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| T |
37503128 |
atcagaattttgggaagattttatgatctaagtgcagtttggtagggttggatttcctttgatgtttgaatgtttctctattttgacat-ttatgttgtt |
37503226 |
T |
|
| Q |
126 |
tacttcgaagttcggtagcatctggaccttgtagttgctaggttaatatttcagtacgagggattttgccattttagctagctttattttattgtgtttg |
225 |
Q |
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| T |
37503227 |
tacttcgaagttcggtagcatctggaccttgtagttgctaggttaatatttcagtacgagggattttgccattttagctagctttattttattgtgtttg |
37503326 |
T |
|
| Q |
226 |
catttatctctccctgcttctacattttcatttcctttgttataggcaggatggttgtgatctatctaggtaaagctgaattaatatataattaacaact |
325 |
Q |
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| T |
37503327 |
catttatctctccctgcttctacattttcatttcctttgttataggcaggatggttgtgatctatctaggtaaagctg-----------aattaacaact |
37503415 |
T |
|
| Q |
326 |
tattgggttttatagttgtgatcgggaaaagtgattggggcctgataggcgcatgttgatatt |
388 |
Q |
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| T |
37503416 |
tattgggttttatagttgtgatcgggaaaagtgattggggcctgataggcgcatgttgatatt |
37503478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 151 - 384
Target Start/End: Complemental strand, 29843156 - 29842944
Alignment:
| Q |
151 |
accttgtagttgctaggttaatatttcagtacgagggattttgccattttagctagctttattttattgtgtttgcatttatctctccctgcttctacat |
250 |
Q |
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|||||||||||||||||||||||||| |||| |||||||||||| |||||| ||| ||||||||||||||| ||| | |||| ||| |
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| T |
29843156 |
accttgtagttgctaggttaatattttagtatgagggattttgca------------tttattctatggtgtttgcatttatccctcttt--ttctgcat |
29843071 |
T |
|
| Q |
251 |
tttcatttcctttgttataggcaggatggttgtgatctatctaggtaaagctgaattaatatataattaacaacttattgggttttatagttgtgatcgg |
350 |
Q |
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|| |||||| |||||||| ||||| || |||||||||| | ||||||| | ||||| |||||||||| |||||||||||||||||| ||||||| |
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| T |
29843070 |
ttccatttctgttgttataagcagggtgattgtgatcta----gttaaagctcagttaatttataattaac---ttattgggttttatagttatgatcgg |
29842978 |
T |
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| Q |
351 |
gaaaagtgattggggcctgataggcgcatgttga |
384 |
Q |
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| T |
29842977 |
gaaaagtgatgggggcctgataggcgaatgttga |
29842944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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