View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0834_high_25 (Length: 272)
Name: NF0834_high_25
Description: NF0834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0834_high_25 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 30 - 272
Target Start/End: Complemental strand, 107423 - 107181
Alignment:
| Q |
30 |
agaagaggttaagacaacacgtttgagtaatggcgatttggcacatgatttgagaacattgagagtcccgttgagtgcaggatcaatcaactcagcctga |
129 |
Q |
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| T |
107423 |
agaagaggttaagacaacacgtttgagtaatggcgatttggcacatgatttgagaacattgagagtcccgttgagtgcaggatcaatcaactcagcctga |
107324 |
T |
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| Q |
130 |
gggtctttgacatcatgatagaagggagatgcagtgtgaaacacaccatgacagccttgaacaacagaatcaaaagctccctgttcaagtagatttgcct |
229 |
Q |
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| T |
107323 |
gggtctttgacatgatgatagaagggagatgcagtgtgaaacacaccatgacagccttgaacagcagaatcaaaagctccctgttcaagtagatttgcct |
107224 |
T |
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| Q |
230 |
taaacagttgtaatctctccttagcaccttcaagcttaaccaa |
272 |
Q |
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| T |
107223 |
taaacagttgtaatctctccttagcaccttcaagcttaaccaa |
107181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 30 - 272
Target Start/End: Complemental strand, 88059 - 87817
Alignment:
| Q |
30 |
agaagaggttaagacaacacgtttgagtaatggcgatttggcacatgatttgagaacattgagagtcccgttgagtgcaggatcaatcaactcagcctga |
129 |
Q |
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| T |
88059 |
agaagaagttaaaacaacacgtttgagtgatggggatttagcacatgagttgagaacattgagagtccctttgagagcaggatcaatcaattcagcctga |
87960 |
T |
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| Q |
130 |
gggtctttgacatcatgatagaagggagatgcagtgtgaaacacaccatgacagccttgaacaacagaatcaaaagctccctgttcaagtagatttgcct |
229 |
Q |
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| T |
87959 |
ggatccttgacatcatgataaaagggagatgcagtgtgaaagacaccatgacagccttgaacaacagaatcaaaggcaccttcttcaagtagatttgcct |
87860 |
T |
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| Q |
230 |
taaacagttgtaatctctccttagcaccttcaagcttaaccaa |
272 |
Q |
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| T |
87859 |
tgaacagttgcaatctctccttagcaccatcaagcttaaccaa |
87817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 98
Target Start/End: Complemental strand, 2707118 - 2707050
Alignment:
| Q |
30 |
agaagaggttaagacaacacgtttgagtaatggcgatttggcacatgatttgagaacattgagagtccc |
98 |
Q |
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| T |
2707118 |
agaagaggttaatacaacacgtttcagagatggaaattttgcacatgatttcagcacatttagagtccc |
2707050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 44784803 - 44784893
Alignment:
| Q |
30 |
agaagaggttaagacaacacgtttgagtaatggcgatttggcacatgatttgagaacattgagagtcccgttgagtgcaggatcaatcaac |
120 |
Q |
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| T |
44784803 |
agaagatgttaagacaacacgtttgagtgatggggattttgcacatgagttgagaacattgagagtccctttgagcgcaggatcaatcaac |
44784893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 129
Target Start/End: Complemental strand, 25934307 - 25934237
Alignment:
| Q |
59 |
atggcgatttggcacatgatttgagaacattgagagtcccgttgagtgcaggatcaatcaactcagcctga |
129 |
Q |
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| T |
25934307 |
atggtgattttgcacatgattgaagaacattaagagttcccttcagtgccggatcaatcaactcagcctga |
25934237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 122
Target Start/End: Complemental strand, 26101933 - 26101881
Alignment:
| Q |
70 |
gcacatgatttgagaacattgagagtcccgttgagtgcaggatcaatcaactc |
122 |
Q |
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| T |
26101933 |
gcacatgatttaagaacattaagagttcccttaagtgccggatcaatcaactc |
26101881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 268
Target Start/End: Complemental strand, 29549082 - 29548974
Alignment:
| Q |
160 |
gcagtgtgaaacacaccatgacagccttgaacaacagaatcaaaagctccctgttcaagtagatttgccttaaacagttgtaatctctccttagcacctt |
259 |
Q |
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| T |
29549082 |
gcagtatgaaagacaccatggcatccttgaataacagaatcaaaggaaccttcttcaagtaaatctgccttaaagagttgcaacctttcctttgcaccat |
29548983 |
T |
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| Q |
260 |
caagcttaa |
268 |
Q |
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| T |
29548982 |
caagtttaa |
29548974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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