View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0834_high_3 (Length: 540)
Name: NF0834_high_3
Description: NF0834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0834_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 97 - 527
Target Start/End: Complemental strand, 36023579 - 36023149
Alignment:
| Q |
97 |
cccctctttgccgtcagctgcccgaagtgagcctaattggactggtgcttgggttgaaaccacttttgatgagccgtaccctgatgtatcaagaccttga |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36023579 |
cccctctttgccgtcagctgcccgaagtgagcctaattggactggtgcttgggttgaaaccacttttgatgagccgtaccctgatgtatcaagaccttga |
36023480 |
T |
|
| Q |
197 |
gccttctccttttcaagttgttccttaatccagacatatgtaatcctcagcccatcctacaataccagaatttagatactgctgtaaaaagatatacaca |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
36023479 |
gccttctccttttcaagttgttccttaatccagacatatgtaatcctcagcccatcctacaataccagaatttagatactgctgtaaaaaaatatacaca |
36023380 |
T |
|
| Q |
297 |
gaatcctttgaatattcatcaagttcaaacagtaagaaagaagaaggtcaactatgaattttactgatgagtagaaaacctaaaaattccattactcttt |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36023379 |
gaatcctttgaatattcatcaagttcaaacagtaagaaagaagaaggtcaactatgaattttactgatgagtagaaaacctaaaaattccattactcttt |
36023280 |
T |
|
| Q |
397 |
ctgaaagaagacgaaggagccaaattggatgaaaacttattaagacacaagaaagaaggaaggagtcattttataccttcaacttcattgttggagccca |
496 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36023279 |
ctgcaagaagacgaaggagccaaattggatgaaaacttattaagacacaagaaagaaggaaggagtcattttataccttcaacttcattgttggagccca |
36023180 |
T |
|
| Q |
497 |
gccaagtttctcttttattagtgtattgtct |
527 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
36023179 |
gccaagtttctcttttattagtgtattgtct |
36023149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 469 - 527
Target Start/End: Original strand, 47516539 - 47516597
Alignment:
| Q |
469 |
ataccttcaacttcattgttggagcccagccaagtttctcttttattagtgtattgtct |
527 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
47516539 |
ataccttcaacttcattgttggagcccagccaagtttctctttgataagtgtattgtct |
47516597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 196 - 273
Target Start/End: Original strand, 47515562 - 47515639
Alignment:
| Q |
196 |
agccttctccttttcaagttgttccttaatccagacatatgtaatcctcagcccatcctacaataccagaatttagat |
273 |
Q |
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||||||||| || ||||| || || |||||||||| |||||||| |||||||||||||| |||| ||||||| |||| |
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| T |
47515562 |
agccttctctttctcaagctgctctttaatccagaagtatgtaattctcagcccatcctataatatcagaattgagat |
47515639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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