View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0834_high_38 (Length: 233)
Name: NF0834_high_38
Description: NF0834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0834_high_38 |
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| [»] scaffold1113 (2 HSPs) |
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| [»] scaffold0961 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 36 - 211
Target Start/End: Original strand, 32684055 - 32684230
Alignment:
| Q |
36 |
gaacctgtgataacatgaatgaatcagagataggggaatttgacatgaaggtgtgtggatatcattgtaagaatctcaaatttggtcgaagataaattgt |
135 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32684055 |
gaacctgtgataacatgaatgaatcagagatagggaaatttgacatgaaggtgtgtggatatcattgtaagaatctcaaatttggtcgaagataaattgt |
32684154 |
T |
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| Q |
136 |
agacgcatgaatgagccggatgctgatttagcattcaaggcaagtttttctctaacaataattttgattctaagtt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32684155 |
agacgcatgaatgagccggatgctgatttagcattcaaggcaagtttttctctaacaataattttgattctaagtt |
32684230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 32692090 - 32692128
Alignment:
| Q |
173 |
aggcaagtttttctctaacaataattttgattctaagtt |
211 |
Q |
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| T |
32692090 |
aggcaagtttttctctaacaataattttgattctaagtt |
32692128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1113 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: scaffold1113
Description:
Target: scaffold1113; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 134 - 211
Target Start/End: Complemental strand, 134 - 57
Alignment:
| Q |
134 |
gtagacgcatgaatgagccggatgctgatttagcattcaaggcaagtttttctctaacaataattttgattctaagtt |
211 |
Q |
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|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
134 |
gtagacgcgtgaatgagccggatgctgatttagcattcgaggcaagtttttctctaacaataattttgattctaagtt |
57 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1113; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 1904 - 1872
Alignment:
| Q |
173 |
aggcaagtttttctctaacaataattttgattc |
205 |
Q |
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| T |
1904 |
aggcaagtttttctctaacaatgattttgattc |
1872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0961 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0961
Description:
Target: scaffold0961; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 1713 - 1745
Alignment:
| Q |
173 |
aggcaagtttttctctaacaataattttgattc |
205 |
Q |
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|||||||||||||||||||||| |||||||||| |
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| T |
1713 |
aggcaagtttttctctaacaatgattttgattc |
1745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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