View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0834_high_8 (Length: 431)
Name: NF0834_high_8
Description: NF0834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0834_high_8 |
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| [»] scaffold0101 (1 HSPs) |
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Alignment Details
Target: scaffold0101 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: scaffold0101
Description:
Target: scaffold0101; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 6 - 327
Target Start/End: Complemental strand, 13202 - 12881
Alignment:
| Q |
6 |
agaagttgttgctatcaatactacttctttcaacagtacaaagtttatgcaattctagagaagctgggatagcttgatggggccgctctttgttatgcga |
105 |
Q |
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|||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
13202 |
agaagttgttgctatcaatactacttttttcaacagtgcaaagtttatgcgattctagagaagctgggatagcttgatggggcctctctttgttatgctg |
13103 |
T |
|
| Q |
106 |
ctgatcttcaacttgattagaggaaacaggctgctattctttctctcttagttctttttgttgcaacctatttgtcacagcataattttctgtacatttt |
205 |
Q |
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||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||| ||||||||||| || || |||||||||||||||||| |
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| T |
13102 |
ctgatcttcaacttgattagaggaatcaggctactattctttctctctttgttctttttgttgtaacctatttgttacggcgtaattttctgtacatttt |
13003 |
T |
|
| Q |
206 |
catctggtgttaacagggttagtgttacatgggtttggtgtaccacaaatgcaacttccctcagnnnnnnngaattttgtgtttgggtgttacagcggag |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
13002 |
catctggtgttaacagggttagtgttacatgggtttggtgtaccacaaatgcaacttccctcagttcttttgaattttgtgtttgggtgttacagcggag |
12903 |
T |
|
| Q |
306 |
acagactatgaatatttggtgt |
327 |
Q |
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||||||||||||||||| |||| |
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| T |
12902 |
acagactatgaatatttagtgt |
12881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 223; Significance: 1e-122; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 6 - 256
Target Start/End: Complemental strand, 17322456 - 17322206
Alignment:
| Q |
6 |
agaagttgttgctatcaatactacttctttcaacagtacaaagtttatgcaattctagagaagctgggatagcttgatggggccgctctttgttatgcga |
105 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
17322456 |
agaagttgttgctatcaatactacttctttcaacagtgcaaagtttatgccattctagagatgctgggatagcttgatggggccgctctttgttatgctg |
17322357 |
T |
|
| Q |
106 |
ctgatcttcaacttgattagaggaaacaggctgctattctttctctcttagttctttttgttgcaacctatttgtcacagcataattttctgtacatttt |
205 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
17322356 |
ctgatcttcaacttgattagaggaatcaggctgctattctttctctcttagttctttttgttgcaacctatttgttacagcataattttctgtacatttt |
17322257 |
T |
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| Q |
206 |
catctggtgttaacagggttagtgttacatgggtttggtgtaccacaaatg |
256 |
Q |
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| T |
17322256 |
catctggtgttaacagggttagtgttacatgggtttggtgtaccacaaatg |
17322206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 6 - 256
Target Start/End: Complemental strand, 17328234 - 17327984
Alignment:
| Q |
6 |
agaagttgttgctatcaatactacttctttcaacagtacaaagtttatgcaattctagagaagctgggatagcttgatggggccgctctttgttatgcga |
105 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
17328234 |
agaagttgttgctatcaatactacttctttcaacagtgcaaagtttatgccattctagagatgctgggatagcttgatggggccgctctttgttatgctg |
17328135 |
T |
|
| Q |
106 |
ctgatcttcaacttgattagaggaaacaggctgctattctttctctcttagttctttttgttgcaacctatttgtcacagcataattttctgtacatttt |
205 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
17328134 |
ctgatcttcaacttgattagaggaatcaggctgctattctttctctcttagttctttttgttgcaacctatttgttacagcataattttctgtacatttt |
17328035 |
T |
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| Q |
206 |
catctggtgttaacagggttagtgttacatgggtttggtgtaccacaaatg |
256 |
Q |
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| T |
17328034 |
catctggtgttaacagggttagtgttacatgggtttggtgtaccacaaatg |
17327984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 6 - 256
Target Start/End: Complemental strand, 17305623 - 17305374
Alignment:
| Q |
6 |
agaagttgttgctatcaatactacttctttcaacagtacaaagtttatgcaattctagagaagctgggatagcttgatggggccgctctttgttatgcga |
105 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| || |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
17305623 |
agaagttgttgctatcaatactactt-tttcaacggtgcaaagtttatgccattctagagatgctgggatagcttgatggggccgctctttgttatgctg |
17305525 |
T |
|
| Q |
106 |
ctgatcttcaacttgattagaggaaacaggctgctattctttctctcttagttctttttgttgcaacctatttgtcacagcataattttctgtacatttt |
205 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
17305524 |
ctgatcttcaacttgattagaggaatcaggctgctattctttctctcttagttctttttgttgcaacctatttgttacagcataattttctgtacatttt |
17305425 |
T |
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| Q |
206 |
catctggtgttaacagggttagtgttacatgggtttggtgtaccacaaatg |
256 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
17305424 |
catctggtgttaacggggttagtgttacatgggtttggtgtaccacaaatg |
17305374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 45 - 167
Target Start/End: Complemental strand, 17295906 - 17295786
Alignment:
| Q |
45 |
aaagtttatgcaattctagagaagctgggatagcttgatggggccgctctttgttatgcgactgatcttcaacttgattagaggaaacaggctgctattc |
144 |
Q |
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|||||||||| ||||||| |||| |||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||| |||||| || ||| |
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| T |
17295906 |
aaagtttatg--attctagtgaagttgggatagcttgttggggcctctctttgttatgctgttgatcttcaacttgattagaggaatcaggctacttttc |
17295809 |
T |
|
| Q |
145 |
tttctctcttagttctttttgtt |
167 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
17295808 |
tttctctcttagttctttttgtt |
17295786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 335 - 406
Target Start/End: Complemental strand, 17342217 - 17342146
Alignment:
| Q |
335 |
acgtcgctatcgtcatgaataattggaagataataaactgtttttcacacgtcttcgtctttgtttgcccta |
406 |
Q |
| |
|
||||||||||||||| |||||| ||| ||||||||||||||||||||| |||||||||||||| ||||||| |
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|
| T |
17342217 |
acgtcgctatcgtcacgaataaccggacgataataaactgtttttcacatgtcttcgtctttgtctgcccta |
17342146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 139 - 213
Target Start/End: Complemental strand, 17296011 - 17295936
Alignment:
| Q |
139 |
ctattctttctctcttagttctttttgttgcaacctatttgtcacagcataa-ttttctgtacattttcatctggt |
213 |
Q |
| |
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||||||||||||||| |||||||||| | || |||||||||||| ||||| ||||||||||||| ||||||||| |
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| T |
17296011 |
ctattctttctctctcagttctttttcctacagactatttgtcacaacataatttttctgtacattctcatctggt |
17295936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 335 - 398
Target Start/End: Complemental strand, 17318662 - 17318599
Alignment:
| Q |
335 |
acgtcgctatcgtcatgaataattggaagataataaactgtttttcacacgtcttcgtctttgt |
398 |
Q |
| |
|
||||||||||||||| ||||| ||| ||||||||| ||||||||||| |||||||||||||| |
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|
| T |
17318662 |
acgtcgctatcgtcacaaataaccggaggataataaattgtttttcacatgtcttcgtctttgt |
17318599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 335 - 396
Target Start/End: Original strand, 25658835 - 25658896
Alignment:
| Q |
335 |
acgtcgctatcgtcatgaataattggaagataataaactgtttttcacacgtcttcgtcttt |
396 |
Q |
| |
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||||| ||||| |||||||||| || |||||||||||||||||||||||||||| ||||| |
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| T |
25658835 |
acgtcactatcatcatgaataaccagatgataataaactgtttttcacacgtcttcatcttt |
25658896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 398
Target Start/End: Original strand, 25850420 - 25850483
Alignment:
| Q |
335 |
acgtcgctatcgtcatgaataattggaagataataaactgtttttcacacgtcttcgtctttgt |
398 |
Q |
| |
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|||||| |||||||| |||||| ||||||||||||| ||||||||| |||||||||||||| |
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| T |
25850420 |
acgtcgttatcgtcacgaataacctgaagataataaaccatttttcacatgtcttcgtctttgt |
25850483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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