View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0834_low_1 (Length: 636)
Name: NF0834_low_1
Description: NF0834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0834_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 147 - 437
Target Start/End: Complemental strand, 45363087 - 45362797
Alignment:
| Q |
147 |
taaacaccattgagtttgattgaatactaaccaagactgtacatggccatgccaagccctgcatctgacaatatggaaatagacttttctatgataacag |
246 |
Q |
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| T |
45363087 |
taaacaccattgagttttattgaatactaaccaagactgaacatggccatgccaagccctgcatccgacaatatggaaatagactttgctatgataacag |
45362988 |
T |
|
| Q |
247 |
gcatttcaatattccacctgaatgaaatgagtgaccaagttaggccgataatgctcgaatatgtgtttgggtttctgataagttttctccaaaccattat |
346 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45362987 |
gcatttcaatattccacctgaatgaaatgagtgaccaagttaggccgataatgctcgaatatgtgtttgggtttctgataagttttctccaaaccattat |
45362888 |
T |
|
| Q |
347 |
caatatcagcctcgtcattatacttgctggtggcatcgtttttgctccaccttcctcccctctcttgtgctcatcctcaccctccactgac |
437 |
Q |
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| T |
45362887 |
caatatcagcctcgtcattatacttgctggtggcatcgtttttgccccaccttcctcccctctcttgtgctcatcctcaccctccactgac |
45362797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 485 - 577
Target Start/End: Complemental strand, 45362752 - 45362660
Alignment:
| Q |
485 |
gcaaacaactattagtaaaaaataattaaaagaaacctttttctggagagacattcaatttaacatcagaaacaagggaatcacttgaactcc |
577 |
Q |
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| T |
45362752 |
gcaaacaactattagtaaaaaataattaaaagaaacctttttctggagagacattcaatttaacatcagaaacaagggaatcacttgaactcc |
45362660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 86 - 116
Target Start/End: Complemental strand, 45363267 - 45363237
Alignment:
| Q |
86 |
atgaacagaatcataaaggaaaaggagcaaa |
116 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
45363267 |
atgaacagaatcataaaggaaaaggagcaaa |
45363237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 262 - 382
Target Start/End: Complemental strand, 25040338 - 25040218
Alignment:
| Q |
262 |
acctgaatgaaatgagtgaccaagttaggccgataatgctcgaatatgtgtttgggtttctgataagttttctccaaaccattatcaatatcagcctcgt |
361 |
Q |
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|||||||||||| | |||||||| || || || | ||| ||||| |||||||| |||||||||||||||||||||||||| |||||||| ||||| || |
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| T |
25040338 |
acctgaatgaaaccaaagaccaagtgagaccaattaagctagaataagtgtttggatttctgataagttttctccaaaccataatcaatataagccttgt |
25040239 |
T |
|
| Q |
362 |
cattatacttgctggtggcat |
382 |
Q |
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||| | ||| ||||||||||| |
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| T |
25040238 |
catcacactagctggtggcat |
25040218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 176 - 258
Target Start/End: Complemental strand, 25040782 - 25040700
Alignment:
| Q |
176 |
accaagactgtacatggccatgccaagccctgcatctgacaatatggaaatagacttttctatgataacaggcatttcaatat |
258 |
Q |
| |
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|||||||||| |||| ||||||||||| ||||||||||||| ||||||||||||||| |||| || ||||||||||||||| |
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| T |
25040782 |
accaagactgaacatagccatgccaagtcctgcatctgacagaatggaaatagactttgctataatggcaggcatttcaatat |
25040700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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