View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0834_low_13 (Length: 414)
Name: NF0834_low_13
Description: NF0834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0834_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 78 - 385
Target Start/End: Original strand, 40648624 - 40648931
Alignment:
| Q |
78 |
tgacaagagctctgcagctgcaacaaaagctacgggtttaacgggtattgatcatgctaccatgaaacaaaaggtacgatttgaattaaatgaactactc |
177 |
Q |
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| T |
40648624 |
tgacaagagctctgcagctgcaacaaaagctacgggttttacgggtattgatcatgctaccatgaaacaaaaggtacgatttgaattaaatgaactcctc |
40648723 |
T |
|
| Q |
178 |
attagttcattatcatcacaggatctaggagattttatttcgtataaaatatcaagggatcaattgtgatgtgcaattttacttcgagtacttggtggtt |
277 |
Q |
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| T |
40648724 |
attagttcattatcatcacaggatctaggagattttatttcgtataaaatatcaagggatcaattgtgatgtgcaattttacttcgagtacttggtggtt |
40648823 |
T |
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| Q |
278 |
agatgtattgttcataaacacacacatatatctaaaacatgtcgcatagttgtatatttgtaactcttacttcaatgaaactnnnnnnnggctttcagat |
377 |
Q |
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| T |
40648824 |
agatgtattgttcataaacacacacatatatctaaaacatgtcgcatagttgtatatttgtaactcttacttcaatgaaactaaaaaaaggctttcagat |
40648923 |
T |
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| Q |
378 |
ttataacc |
385 |
Q |
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| T |
40648924 |
ttataacc |
40648931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 40648522 - 40648593
Alignment:
| Q |
9 |
agcataggatacagaaatttatgagatcgattatagaggtcctgagactcactcgtttgtgcctccacctga |
80 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40648522 |
agcattggatacagaaatttatgagatcgattatagaggtcctgagactcactcgtttgtgcctccacctga |
40648593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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