View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0834_low_17 (Length: 372)
Name: NF0834_low_17
Description: NF0834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0834_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 96 - 357
Target Start/End: Complemental strand, 22231949 - 22231691
Alignment:
| Q |
96 |
ccctcaccactcagcagtgcacccatttacaacacattggtccttccaaacattgatgacttatcactattcc-ttctttgaactacttgtttgaagtgc |
194 |
Q |
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| T |
22231949 |
ccctcaccactcagcagtgcacccatttacaacacattggtcctcccaaacattgatgacttatcactattcccttctttgaactacttgtttgaagtgc |
22231850 |
T |
|
| Q |
195 |
tttttctctctcacacaaataagttgcttctctagctaatggcaagttgcaacatcatctctttcttgaaaatgaaaagaataaggaaaataagaataca |
294 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
22231849 |
tttctctctctcacacaaataagttgcttctctagctaatggcaagttgcaacatcatctctt----gaaaatgaaaagaataaggaaaataagaataca |
22231754 |
T |
|
| Q |
295 |
aatgtatttttatagtttacaacattttatttcaagtcctcctcctataaagagattttgcct |
357 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22231753 |
aatgtatttttatagtttacaacattttatttcaagtcctcctcctataaagagattttgcct |
22231691 |
T |
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