View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0834_low_18 (Length: 365)
Name: NF0834_low_18
Description: NF0834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0834_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 30 - 356
Target Start/End: Complemental strand, 3433398 - 3433072
Alignment:
| Q |
30 |
tgctttaccattttggaactatgacgctcctaatggcatgcaatttcccttcatct-cactcgaccgtacatctcctctttacgatgaactccgaaatgc |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3433398 |
tgctttaccattttggaactatgacgctcctaatggcatgcaatttccctccatttacac-cgaccgtacatctcctctttacgatgaactccgaaatgc |
3433300 |
T |
|
| Q |
129 |
aaatcatcaacctccaacactcatagactttaactatgtacctggcgatgatagcgatgaagttgatgaaaatgaaaggatctccacaaaccttactata |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3433299 |
aaatcatcaacctccaacactcatagactttaactatgtacctggcgatgatagcgatgaagttgatgaaaatgaaaggatctccacaaaccttactata |
3433200 |
T |
|
| Q |
229 |
atgtatagacaggttgtgtctggtggaaaaacctcaagacttttcctcggaaacccttaccgtgctggagatgcaccggatcccggtgctggatccgtag |
328 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3433199 |
atgtatagacaggttgtgtctggtggaaaaacctcaacacttttcctcggaaacccttaccgtgctggagatgcaccggatcccggtgctggatccgtag |
3433100 |
T |
|
| Q |
329 |
agattgttccacataatatagttcatct |
356 |
Q |
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| T |
3433099 |
agattgttccacataatatagttcatct |
3433072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 30 - 342
Target Start/End: Complemental strand, 3427207 - 3426904
Alignment:
| Q |
30 |
tgctttaccattttggaactatgacgctcctaatggcatgcaatttcccttcatct-cactcgaccgtacatctcctctttacgatgaactccgaaatgc |
128 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||| ||| | ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3427207 |
tgctttaccattttggaactatgacgctccaaatggcatgcaatttccctccatttacac-cgaccgtacatctcctctttacgatgaactccgaaatgc |
3427109 |
T |
|
| Q |
129 |
aaatcatcaacctccaacactcatagactttaactatgtacctggcgatgatagcgatgaagttgatgaaaatgaaaggatctccacaaaccttactata |
228 |
Q |
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|||||||||||||||||||||||||||||| ||||| || || ||| ||||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
3427108 |
aaatcatcaacctccaacactcatagacttaaacta------tgacggtga---cgatgaaaatgatgaaaatgaaagaatctccacaaaccttactata |
3427018 |
T |
|
| Q |
229 |
atgtatagacaggttgtgtctggtggaaaaacctcaagacttttcctcggaaacccttaccgtgctggagatgcaccggatcccggtgctggatccgtag |
328 |
Q |
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||||||||||| |||| || ||||||||| |||| || |||||||||| | |||||||||| || ||| ||| ||||| |||||||||||| ||| |
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| T |
3427017 |
atgtatagacaacttgtctcaaatggaaaaacttcaactctattcctcggaagctcttaccgtgccggtgatcaacccgatccaggtgctggatccatag |
3426918 |
T |
|
| Q |
329 |
agattgttccacat |
342 |
Q |
| |
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||| |||||||||| |
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| T |
3426917 |
agaatgttccacat |
3426904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 30 - 354
Target Start/End: Original strand, 11897069 - 11897390
Alignment:
| Q |
30 |
tgctttaccattttggaactatgacgctcctaatggcatgcaatttcccttcatct-cactcgaccgtacatctcctctttacgatgaactccgaaatgc |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| ||| | ||| ||||| |||||||||||||||||| ||||||||||||| |
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| T |
11897069 |
tgctttaccattttggaactatgacgctcctaatggcatgcgatttccctccatttacac-cgaccctacatctcctctttacgacaaactccgaaatgc |
11897167 |
T |
|
| Q |
129 |
aaatcatcaacctccaacactcatagactttaactatgtacctggcgatgatagcgatgaagttgatgaaaatgaaaggatctccacaaaccttactata |
228 |
Q |
| |
|
||| |||||||||||||||||||||||||| ||||||| | ||||||| | |||||||| || ||||||| | | ||| |||||||||||||||| |
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|
| T |
11897168 |
aaaacatcaacctccaacactcatagacttcaactatggtcactgcgatgacatcgatgaagatggtgaaaataacataatccacacaaaccttactata |
11897267 |
T |
|
| Q |
229 |
atgtatagacaggttgtgtctggtggaaaaacctcaagacttttcctcggaaacccttaccgtgctggagatgcaccggatcccggtgctggatccgtag |
328 |
Q |
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||||||||||||||||||||| | ||||||| ||||||||||||||||||| |||||||||||||||||| || |||| | ||||||||||||||| |
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| T |
11897268 |
atgtatagacaggttgtgtctagaggaaaaaactcaagacttttcctcggatacccttaccgtgctggaggtgtaccgaa---atgtgctggatccgtag |
11897364 |
T |
|
| Q |
329 |
agattgttccacataatatagttcat |
354 |
Q |
| |
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|||||||||| ||||||| ||||||| |
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| T |
11897365 |
agattgttcctcataatacagttcat |
11897390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 11912402 - 11912451
Alignment:
| Q |
30 |
tgctttaccattttggaactatgacgctcctaatggcatgcaatttccct |
79 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
11912402 |
tgctttaccattttggaactttgacgctcctaatggcatgcaatttccct |
11912451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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