View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0834_low_19 (Length: 365)
Name: NF0834_low_19
Description: NF0834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0834_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 30 - 356
Target Start/End: Complemental strand, 3433398 - 3433072
Alignment:
| Q |
30 |
tgctttaccattttggaactatgacgctcctaatggcatgcaatttccctccatttacaccgaccgtacatctcctctttacgatgaactccgaaatgca |
129 |
Q |
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| T |
3433398 |
tgctttaccattttggaactatgacgctcctaatggcatgcaatttccctccatttacaccgaccgtacatctcctctttacgatgaactccgaaatgca |
3433299 |
T |
|
| Q |
130 |
aatcatcaacctccaacactcatagactttaactatgtacctggcgatgatagcgatgaagttgatgaaaatgaaaggatctccacaaaccttactataa |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3433298 |
aatcatcaacctccaacactcatagactttaactatgtacctggcgatgatagcgatgaagttgatgaaaatgaaaggatctccacaaaccttactataa |
3433199 |
T |
|
| Q |
230 |
tgtatagacaggttgtgtctggtggaaaaacctcaagacttttcctcggaaacccttaccgtgctggagatgcaccggatcccggtgctggatccgtaga |
329 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3433198 |
tgtatagacaggttgtgtctggtggaaaaacctcaacacttttcctcggaaacccttaccgtgctggagatgcaccggatcccggtgctggatccgtaga |
3433099 |
T |
|
| Q |
330 |
gattgttccacataatatagttcatct |
356 |
Q |
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| T |
3433098 |
gattgttccacataatatagttcatct |
3433072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 30 - 342
Target Start/End: Complemental strand, 3427207 - 3426904
Alignment:
| Q |
30 |
tgctttaccattttggaactatgacgctcctaatggcatgcaatttccctccatttacaccgaccgtacatctcctctttacgatgaactccgaaatgca |
129 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3427207 |
tgctttaccattttggaactatgacgctccaaatggcatgcaatttccctccatttacaccgaccgtacatctcctctttacgatgaactccgaaatgca |
3427108 |
T |
|
| Q |
130 |
aatcatcaacctccaacactcatagactttaactatgtacctggcgatgatagcgatgaagttgatgaaaatgaaaggatctccacaaaccttactataa |
229 |
Q |
| |
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||||||||||||||||||||||||||||| ||||| || || ||| ||||||| ||||||||||||||| |||||||||||||||||||||| |
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| T |
3427107 |
aatcatcaacctccaacactcatagacttaaacta------tgacggtga---cgatgaaaatgatgaaaatgaaagaatctccacaaaccttactataa |
3427017 |
T |
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| Q |
230 |
tgtatagacaggttgtgtctggtggaaaaacctcaagacttttcctcggaaacccttaccgtgctggagatgcaccggatcccggtgctggatccgtaga |
329 |
Q |
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|||||||||| |||| || ||||||||| |||| || |||||||||| | |||||||||| || ||| ||| ||||| |||||||||||| |||| |
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| T |
3427016 |
tgtatagacaacttgtctcaaatggaaaaacttcaactctattcctcggaagctcttaccgtgccggtgatcaacccgatccaggtgctggatccataga |
3426917 |
T |
|
| Q |
330 |
gattgttccacat |
342 |
Q |
| |
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|| |||||||||| |
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| T |
3426916 |
gaatgttccacat |
3426904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 183; Significance: 6e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 30 - 354
Target Start/End: Original strand, 11897069 - 11897390
Alignment:
| Q |
30 |
tgctttaccattttggaactatgacgctcctaatggcatgcaatttccctccatttacaccgaccgtacatctcctctttacgatgaactccgaaatgca |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
11897069 |
tgctttaccattttggaactatgacgctcctaatggcatgcgatttccctccatttacaccgaccctacatctcctctttacgacaaactccgaaatgca |
11897168 |
T |
|
| Q |
130 |
aatcatcaacctccaacactcatagactttaactatgtacctggcgatgatagcgatgaagttgatgaaaatgaaaggatctccacaaaccttactataa |
229 |
Q |
| |
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|| |||||||||||||||||||||||||| ||||||| | ||||||| | |||||||| || ||||||| | | ||| ||||||||||||||||| |
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|
| T |
11897169 |
aaacatcaacctccaacactcatagacttcaactatggtcactgcgatgacatcgatgaagatggtgaaaataacataatccacacaaaccttactataa |
11897268 |
T |
|
| Q |
230 |
tgtatagacaggttgtgtctggtggaaaaacctcaagacttttcctcggaaacccttaccgtgctggagatgcaccggatcccggtgctggatccgtaga |
329 |
Q |
| |
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|||||||||||||||||||| | ||||||| ||||||||||||||||||| |||||||||||||||||| || |||| | |||||||||||||||| |
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| T |
11897269 |
tgtatagacaggttgtgtctagaggaaaaaactcaagacttttcctcggatacccttaccgtgctggaggtgtaccgaa---atgtgctggatccgtaga |
11897365 |
T |
|
| Q |
330 |
gattgttccacataatatagttcat |
354 |
Q |
| |
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||||||||| ||||||| ||||||| |
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|
| T |
11897366 |
gattgttcctcataatacagttcat |
11897390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 11912402 - 11912455
Alignment:
| Q |
30 |
tgctttaccattttggaactatgacgctcctaatggcatgcaatttccctccat |
83 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
11912402 |
tgctttaccattttggaactttgacgctcctaatggcatgcaatttccctccat |
11912455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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