View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0834_low_2 (Length: 562)

Name: NF0834_low_2
Description: NF0834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0834_low_2
NF0834_low_2
[»] chr4 (28 HSPs)
chr4 (30-482)||(829389-829841)
chr4 (297-409)||(837648-837760)
chr4 (34-136)||(837936-838039)
chr4 (230-299)||(837785-837854)
chr4 (219-299)||(6372454-6372534)
chr4 (223-291)||(8443439-8443507)
chr4 (239-299)||(6392833-6392893)
chr4 (223-299)||(10482190-10482266)
chr4 (457-550)||(6387937-6388030)
chr4 (223-291)||(8447639-8447707)
chr4 (223-299)||(10468051-10468127)
chr4 (37-138)||(10475407-10475509)
chr4 (360-433)||(10493525-10493598)
chr4 (223-299)||(6388249-6388325)
chr4 (370-433)||(6392671-6392733)
chr4 (90-143)||(10482367-10482420)
chr4 (371-423)||(10467903-10467955)
chr4 (371-423)||(10482041-10482093)
chr4 (229-285)||(10571267-10571323)
chr4 (236-299)||(53774849-53774912)
chr4 (90-136)||(10468235-10468281)
chr4 (96-137)||(10460823-10460864)
chr4 (235-291)||(3557743-3557799)
chr4 (235-291)||(3565761-3565817)
chr4 (453-489)||(8437401-8437437)
chr4 (223-291)||(10460642-10460710)
chr4 (223-299)||(10464278-10464354)
chr4 (456-492)||(10493454-10493490)
[»] chr8 (1 HSPs)
chr8 (385-506)||(21258682-21258803)
[»] chr1 (2 HSPs)
chr1 (238-294)||(50645485-50645541)
chr1 (371-423)||(50645643-50645695)
[»] chr2 (2 HSPs)
chr2 (237-291)||(25377091-25377145)
chr2 (453-497)||(25376854-25376898)
[»] chr3 (2 HSPs)
chr3 (230-293)||(25915289-25915352)
chr3 (236-293)||(25901277-25901334)
[»] chr7 (8 HSPs)
chr7 (237-299)||(13416910-13416972)
chr7 (232-300)||(26217975-26218043)
chr7 (236-299)||(22063651-22063714)
chr7 (236-299)||(22100502-22100565)
chr7 (239-300)||(24035759-24035820)
chr7 (238-294)||(1985955-1986011)
chr7 (238-294)||(15571895-15571951)
chr7 (232-300)||(26256783-26256851)
[»] scaffold0867 (1 HSPs)
scaffold0867 (236-299)||(4667-4730)
[»] chr6 (1 HSPs)
chr6 (232-299)||(20770659-20770726)
[»] scaffold0354 (1 HSPs)
scaffold0354 (237-299)||(7472-7534)


Alignment Details
Target: chr4 (Bit Score: 433; Significance: 0; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 30 - 482
Target Start/End: Original strand, 829389 - 829841
Alignment:
Q  30 catagaatcgaaaccaaactttcaagtaatccttagcttccgaccagaatatattatcattaattccaattttctctactctattgtatctgcagttata 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  829389 catagaatcgaaaccaaactttcaagtaatccttagcttccgaccagaatatattatcattaattccaattttctctactctattgtatctgcagttata 829488  T
Q  130 aataaatgcttcgtcaactttattactatttgccaatatcatatcacaattctcagaaaatatacaatggcaacaaattcaaacctcatttgctgaaaag 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  829489 aataaatgcttcgtcaactttattactatttgccaatatcatatcacaattctcagaaaatatacaatggcaacaaattcaaacctcatttgctgaaaag 829588  T
Q  230 aaattatgataactaattttaaataattgaacccaagactcttgaacaccaaaatccttcatttggcataatgacaaaagcaaatacagtccatcaaacc 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  829589 aaattatgataactaattttaaataattgaacccaagactcttgaacaccaaaatccttcatttggcataatgacaaaagcaaatacagtccatcaaacc 829688  T
Q  330 cacaagtgatggccgatagaacaactccttaacaaaaacctgaggcagccacaatttagtgtatgtctcagtggaaagatcaagtgaaagaatcgtatat 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  829689 cacaagtgatggccgatagaacaactccttaacaaaaacctgaggcagccacaatttagtgtatgtctcagtggaaagatcaagtgaaagaatcgcatat 829788  T
Q  430 tgctttaaactaaagtgatcgcaaagggccaacccgttaatagtaccactcaa 482  Q
    |||||| ||| ||||||||||||||||||||||| |||||||||||| |||||    
T  829789 tgctttgaaccaaagtgatcgcaaagggccaaccagttaatagtaccgctcaa 829841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 297 - 409
Target Start/End: Complemental strand, 837760 - 837648
Alignment:
Q  297 ataatgacaaaagcaaatacagtccatcaaacccacaagtgatggccgatagaacaactccttaacaaaaacctgaggcagccacaatttagtgtatgtc 396  Q
    |||||||||||||||||| ||| |||| |||  ||||||||||||| ||||||||  |||||||||||||||| |||||||| ||| || ||||||||||    
T  837760 ataatgacaaaagcaaatgcagcccattaaatgcacaagtgatggctgatagaaccgctccttaacaaaaacccgaggcagcaacagttgagtgtatgtc 837661  T
Q  397 tcagtggaaagat 409  Q
    |||| ||| ||||    
T  837660 tcagcggagagat 837648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 34 - 136
Target Start/End: Complemental strand, 838039 - 837936
Alignment:
Q  34 gaatcgaaaccaaactttcaa-gtaatccttagcttccgaccagaatatattatcattaattccaattttctctactctattgtatctgcagttataaat 132  Q
    |||| |||||||||||||||| |||||||||||| | |||||| ||| |||||||||||  |||||||| |||||||||||||| |||||||||||| ||    
T  838039 gaattgaaaccaaactttcaaagtaatccttagccttcgaccataatttattatcattagatccaatttcctctactctattgtctctgcagttatagat 837940  T
Q  133 aaat 136  Q
    ||||    
T  837939 aaat 837936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 230 - 299
Target Start/End: Complemental strand, 837854 - 837785
Alignment:
Q  230 aaattatgataactaattttaaataattgaacccaagactcttgaacaccaaaatccttcatttggcata 299  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||    
T  837854 aaattatgatagctaattttaaataattgaatccaagactcttgaacaccaaaattcttcatttgccata 837785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 219 - 299
Target Start/End: Complemental strand, 6372534 - 6372454
Alignment:
Q  219 ttgctgaaaagaaattatgataactaattttaaataattgaacccaagactcttgaacaccaaaatccttcatttggcata 299  Q
    |||||||||||||||| | ||||||||||||| ||||||||| | ||||||||||||| ||| ||||||||||||| ||||    
T  6372534 ttgctgaaaagaaattgttataactaattttatataattgaatctaagactcttgaactccagaatccttcatttgccata 6372454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 223 - 291
Target Start/End: Original strand, 8443439 - 8443507
Alignment:
Q  223 tgaaaagaaattatgataactaattttaaataattgaacccaagactcttgaacaccaaaatccttcat 291  Q
    |||||| ||||| ||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||    
T  8443439 tgaaaataaattctgataactaattttaaataattgaatccaagactcgtgaactccaaaatccttcat 8443507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 239 - 299
Target Start/End: Complemental strand, 6392893 - 6392833
Alignment:
Q  239 taactaattttaaataattgaacccaagactcttgaacaccaaaatccttcatttggcata 299  Q
    |||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||| ||||    
T  6392893 taactaattttaaataattgaatccaagactcgtgaactccaaaatccttcatttgccata 6392833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 223 - 299
Target Start/End: Complemental strand, 10482266 - 10482190
Alignment:
Q  223 tgaaaagaaattatgataactaattttaaataattgaacccaagactcttgaacaccaaaatccttcatttggcata 299  Q
    |||||||||||| |||||| |||||||||||||||||| |||||||   ||||| ||||||||||||||||| ||||    
T  10482266 tgaaaagaaattctgataagtaattttaaataattgaatccaagacgactgaactccaaaatccttcatttgccata 10482190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 457 - 550
Target Start/End: Complemental strand, 6388030 - 6387937
Alignment:
Q  457 gccaacccgttaatagtaccactcaaatacacactattgttattaaacctgtaaagtggacgcatatggaagccttcaatatatctccaagaat 550  Q
    ||||||| |||||||||| || |||||||||| | || ||||||||||||| |||||||| ||||  |||||| || ||||| |||||||||||    
T  6388030 gccaaccagttaatagtatcattcaaatacaccccatggttattaaacctgcaaagtggaagcatggggaagcattgaatatttctccaagaat 6387937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 223 - 291
Target Start/End: Original strand, 8447639 - 8447707
Alignment:
Q  223 tgaaaagaaattatgataactaattttaaataattgaacccaagactcttgaacaccaaaatccttcat 291  Q
    |||||| ||||| |||||| |||||||||||||||||| ||||||||| ||||| || |||||||||||    
T  8447639 tgaaaataaattctgataattaattttaaataattgaatccaagactcatgaactccgaaatccttcat 8447707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 223 - 299
Target Start/End: Complemental strand, 10468127 - 10468051
Alignment:
Q  223 tgaaaagaaattatgataactaattttaaataattgaacccaagactcttgaacaccaaaatccttcatttggcata 299  Q
    |||||||||||| | |||| |||||||||||||||||| |||||||   ||||| ||||||||||||||||| ||||    
T  10468127 tgaaaagaaattcttataagtaattttaaataattgaatccaagacgactgaactccaaaatccttcatttgccata 10468051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 37 - 138
Target Start/End: Complemental strand, 10475509 - 10475407
Alignment:
Q  37 tcgaaaccaaactttcaa-gtaatccttagcttccgaccagaatatattatcattaattccaattttctctactctattgtatctgcagttataaataaa 135  Q
    ||||||| |||||||||| ||||||||| || | | ||||||||||||||| | |||||||||||  || ||||||||||| | ||| |||||| |||||    
T  10475509 tcgaaactaaactttcaacgtaatccttggcatgcaaccagaatatattattagtaattccaattcgctttactctattgtctttgcggttatagataaa 10475410  T
Q  136 tgc 138  Q
    |||    
T  10475409 tgc 10475407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 360 - 433
Target Start/End: Complemental strand, 10493598 - 10493525
Alignment:
Q  360 aacaaaaacctgaggcagccacaatttagtgtatgtctcagtggaaagatcaagtgaaagaatcgtatattgct 433  Q
    ||||||| ||||||||| | ||| || |||||||||||||||||||||||| | ||||||||||  ||||||||    
T  10493598 aacaaaaccctgaggcaacaacagttgagtgtatgtctcagtggaaagatcgactgaaagaatcacatattgct 10493525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 299
Target Start/End: Complemental strand, 6388325 - 6388249
Alignment:
Q  223 tgaaaagaaattatgataactaattttaaataattgaacccaagactcttgaacaccaaaatccttcatttggcata 299  Q
    ||||||||||||   |||||||||||| |||| ||||| ||||||||||||  | ||||||||||||||||| ||||    
T  6388325 tgaaaagaaattgctataactaatttttaatagttgaatccaagactcttgggcgccaaaatccttcatttgccata 6388249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 370 - 433
Target Start/End: Complemental strand, 6392733 - 6392671
Alignment:
Q  370 tgaggcagccacaatttagtgtatgtctcagtggaaagatcaagtgaaagaatcgtatattgct 433  Q
    ||||||||| ||||||||||||||||||||||||| ||| | ||||||||||||  ||||||||    
T  6392733 tgaggcagcaacaatttagtgtatgtctcagtggagaga-cgagtgaaagaatcacatattgct 6392671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 90 - 143
Target Start/End: Complemental strand, 10482420 - 10482367
Alignment:
Q  90 taattccaattttctctactctattgtatctgcagttataaataaatgcttcgt 143  Q
    |||||||||||||||||||||||| || |||||  ||||| |||||||||||||    
T  10482420 taattccaattttctctactctatcgtctctgcgattatagataaatgcttcgt 10482367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 423
Target Start/End: Complemental strand, 10467955 - 10467903
Alignment:
Q  371 gaggcagccacaatttagtgtatgtctcagtggaaagatcaagtgaaagaatc 423  Q
    |||| ||| |||||| ||||||||||||||| || ||||||||||||||||||    
T  10467955 gaggtagcaacaattgagtgtatgtctcagttgagagatcaagtgaaagaatc 10467903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 423
Target Start/End: Complemental strand, 10482093 - 10482041
Alignment:
Q  371 gaggcagccacaatttagtgtatgtctcagtggaaagatcaagtgaaagaatc 423  Q
    |||| ||| |||||| ||||||||||||||| || ||||||||||||||||||    
T  10482093 gaggtagcaacaattgagtgtatgtctcagttgagagatcaagtgaaagaatc 10482041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 229 - 285
Target Start/End: Original strand, 10571267 - 10571323
Alignment:
Q  229 gaaattatgataactaattttaaataattgaacccaagactcttgaacaccaaaatc 285  Q
    |||||| | ||||||||||||||| || |||| ||||||||||||||| ||||||||    
T  10571267 gaaattctcataactaattttaaacaactgaatccaagactcttgaactccaaaatc 10571323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 299
Target Start/End: Complemental strand, 53774912 - 53774849
Alignment:
Q  236 tgataactaattttaaataattgaacccaagactcttgaacaccaaaatccttcatttggcata 299  Q
    ||||||||||||||||  ||||||  ||||||||||| ||| ||||| ||||||||||| ||||    
T  53774912 tgataactaattttaaggaattgagtccaagactcttcaactccaaattccttcatttgccata 53774849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 90 - 136
Target Start/End: Complemental strand, 10468281 - 10468235
Alignment:
Q  90 taattccaattttctctactctattgtatctgcagttataaataaat 136  Q
    |||||||||||||||||||||||| || |||||| ||||| ||||||    
T  10468281 taattccaattttctctactctatcgtctctgcaattatagataaat 10468235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 137
Target Start/End: Complemental strand, 10460864 - 10460823
Alignment:
Q  96 caattttctctactctattgtatctgcagttataaataaatg 137  Q
    ||||||||||||||||||||| |||||| ||||| |||||||    
T  10460864 caattttctctactctattgtctctgcaattatagataaatg 10460823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 235 - 291
Target Start/End: Complemental strand, 3557799 - 3557743
Alignment:
Q  235 atgataactaattttaaataattgaacccaagactcttgaacaccaaaatccttcat 291  Q
    |||||||||||||||||  ||||||  ||||||||||| ||| ||||| ||||||||    
T  3557799 atgataactaattttaagaaattgagtccaagactcttcaaccccaaattccttcat 3557743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 235 - 291
Target Start/End: Complemental strand, 3565817 - 3565761
Alignment:
Q  235 atgataactaattttaaataattgaacccaagactcttgaacaccaaaatccttcat 291  Q
    |||||||||||||||||  ||||||  ||||||||||| ||| ||||| ||||||||    
T  3565817 atgataactaattttaagaaattgagtccaagactcttcaaccccaaattccttcat 3565761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 453 - 489
Target Start/End: Original strand, 8437401 - 8437437
Alignment:
Q  453 aagggccaacccgttaatagtaccactcaaatacaca 489  Q
    ||||||||||| ||||||||||||| |||||||||||    
T  8437401 aagggccaaccagttaatagtaccattcaaatacaca 8437437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 223 - 291
Target Start/End: Complemental strand, 10460710 - 10460642
Alignment:
Q  223 tgaaaagaaattatgataactaattttaaataattgaacccaagactcttgaacaccaaaatccttcat 291  Q
    |||||||||| | |||||||||||  |||||||||||  ||| ||||| ||||| ||||||| ||||||    
T  10460710 tgaaaagaaactctgataactaataataaataattgagtccatgactcgtgaactccaaaattcttcat 10460642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 223 - 299
Target Start/End: Complemental strand, 10464354 - 10464278
Alignment:
Q  223 tgaaaagaaattatgataactaattttaaataattgaacccaagactcttgaacaccaaaatccttcatttggcata 299  Q
    |||||| ||||| | ||||| || |||| | ||||||| ||||||||| ||| | ||||||||||||||||| ||||    
T  10464354 tgaaaataaattcttataaccaactttatacaattgaatccaagactcctgatccccaaaatccttcatttgccata 10464278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 456 - 492
Target Start/End: Complemental strand, 10493490 - 10493454
Alignment:
Q  456 ggccaacccgttaatagtaccactcaaatacacacta 492  Q
    |||||||  ||||||||||||||||||||||||||||    
T  10493490 ggccaacgagttaatagtaccactcaaatacacacta 10493454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 385 - 506
Target Start/End: Complemental strand, 21258803 - 21258682
Alignment:
Q  385 ttagtgtatgtctcagtggaaagatcaagtgaaagaatcgtatattgctttaaactaaagtgatcgcaaagggccaacccgttaatagtaccactcaaat 484  Q
    |||| ||||||||||||| ||||||||| ||||||||||  |||||||| | ||| |||||||||||||| ||||||||  |||||||||||||||||||    
T  21258803 ttagcgtatgtctcagtgaaaagatcaactgaaagaatcacatattgctctgaaccaaagtgatcgcaaacggccaaccaattaatagtaccactcaaat 21258704  T
Q  485 acacactattgttattaaacct 506  Q
    |||||| |||||||||||||||    
T  21258703 acacaccattgttattaaacct 21258682  T

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Target: chr1 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 238 - 294
Target Start/End: Original strand, 50645485 - 50645541
Alignment:
Q  238 ataactaattttaaataattgaacccaagactcttgaacaccaaaatccttcatttg 294  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  50645485 ataactaattttaaataattgaatccaagactcttgaactccaaaatccttcatttg 50645541  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 423
Target Start/End: Original strand, 50645643 - 50645695
Alignment:
Q  371 gaggcagccacaatttagtgtatgtctcagtggaaagatcaagtgaaagaatc 423  Q
    |||||||| ||| || |||||||||||| ||||| ||||||||||||||||||    
T  50645643 gaggcagcaacagttgagtgtatgtctcggtggagagatcaagtgaaagaatc 50645695  T

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Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 237 - 291
Target Start/End: Complemental strand, 25377145 - 25377091
Alignment:
Q  237 gataactaattttaaataattgaacccaagactcttgaacaccaaaatccttcat 291  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  25377145 gataactaattttaaataattgaatccaagactcttgaactccaaaatccttcat 25377091  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 453 - 497
Target Start/End: Complemental strand, 25376898 - 25376854
Alignment:
Q  453 aagggccaacccgttaatagtaccactcaaatacacactattgtt 497  Q
    ||||||||||| | |||||||||||||||||||||||| ||||||    
T  25376898 aagggccaaccaggtaatagtaccactcaaatacacaccattgtt 25376854  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 230 - 293
Target Start/End: Original strand, 25915289 - 25915352
Alignment:
Q  230 aaattatgataactaattttaaataattgaacccaagactcttgaacaccaaaatccttcattt 293  Q
    ||||| |||||||||||||| || ||||||| ||||||||||||||| | ||||||||||||||    
T  25915289 aaattctgataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattt 25915352  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 236 - 293
Target Start/End: Original strand, 25901277 - 25901334
Alignment:
Q  236 tgataactaattttaaataattgaacccaagactcttgaacaccaaaatccttcattt 293  Q
    |||||||||||||| || ||||||| ||||||||||||||| | ||||||||||||||    
T  25901277 tgataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattt 25901334  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 299
Target Start/End: Original strand, 13416910 - 13416972
Alignment:
Q  237 gataactaattttaaataattgaacccaagactcttgaacaccaaaatccttcatttggcata 299  Q
    |||||||||||||||  |||| |||||||||||||| ||| ||||| ||||||||||| ||||    
T  13416910 gataactaattttaacgaattcaacccaagactcttcaactccaaattccttcatttgccata 13416972  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 232 - 300
Target Start/End: Complemental strand, 26218043 - 26217975
Alignment:
Q  232 attatgataactaattttaaataattgaacccaagactcttgaacaccaaaatccttcatttggcataa 300  Q
    |||||| |||||||| ||||||||||||  ||||||||||||||| ||| | |||||||| || |||||    
T  26218043 attatggtaactaatcttaaataattgagaccaagactcttgaactccatactccttcatctgccataa 26217975  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 299
Target Start/End: Complemental strand, 22063714 - 22063651
Alignment:
Q  236 tgataactaattttaaataattgaacccaagactcttgaacaccaaaatccttcatttggcata 299  Q
    |||||||||||||| ||||| |||  ||||||||||||||  ||||| ||||||||||| ||||    
T  22063714 tgataactaattttgaataactgagtccaagactcttgaaatccaaattccttcatttgccata 22063651  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 299
Target Start/End: Complemental strand, 22100565 - 22100502
Alignment:
Q  236 tgataactaattttaaataattgaacccaagactcttgaacaccaaaatccttcatttggcata 299  Q
    |||||||||||||| ||||| |||  ||||||||||||||| ||||| | ||||||||| ||||    
T  22100565 tgataactaattttgaataactgagtccaagactcttgaactccaaatttcttcatttgccata 22100502  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 300
Target Start/End: Complemental strand, 24035820 - 24035759
Alignment:
Q  239 taactaattttaaataattgaacccaagactcttgaacaccaaaatccttcatttggcataa 300  Q
    |||||||| ||||||||||||  ||||||||||||||| ||  | ||||||||||| |||||    
T  24035820 taactaatcttaaataattgagtccaagactcttgaacgccgtactccttcatttgccataa 24035759  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 238 - 294
Target Start/End: Original strand, 1985955 - 1986011
Alignment:
Q  238 ataactaattttaaataattgaacccaagactcttgaacaccaaaatccttcatttg 294  Q
    ||||||||||||||| ||||||  |||||| |||| ||| ||||| |||||||||||    
T  1985955 ataactaattttaaacaattgagtccaagattcttcaacgccaaattccttcatttg 1986011  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 238 - 294
Target Start/End: Original strand, 15571895 - 15571951
Alignment:
Q  238 ataactaattttaaataattgaacccaagactcttgaacaccaaaatccttcatttg 294  Q
    |||||||||||||   ||||||||||||||||||| ||| ||||| ||| |||||||    
T  15571895 ataactaattttatggaattgaacccaagactcttcaactccaaactccctcatttg 15571951  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 232 - 300
Target Start/End: Complemental strand, 26256851 - 26256783
Alignment:
Q  232 attatgataactaattttaaataattgaacccaagactcttgaacaccaaaatccttcatttggcataa 300  Q
    |||||| || ||||| ||||||||||||  ||||||||||||||| ||| | |||||||| || |||||    
T  26256851 attatggtagctaatcttaaataattgagtccaagactcttgaactccatactccttcatctgccataa 26256783  T

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Target: scaffold0867 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 299
Target Start/End: Original strand, 4667 - 4730
Alignment:
Q  236 tgataactaattttaaataattgaacccaagactcttgaacaccaaaatccttcatttggcata 299  Q
    |||||||||||||| ||||| |||  ||||||||||||||| ||||| | ||||||||| ||||    
T  4667 tgataactaattttgaataactgagtccaagactcttgaactccaaatttcttcatttgccata 4730  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 299
Target Start/End: Complemental strand, 20770726 - 20770659
Alignment:
Q  232 attatgataactaattttaaataattgaacccaagactcttgaacaccaaaatccttcatttggcata 299  Q
    ||||||||||||||||||||  ||||||| ||| ||||||| ||  ||||| ||||||||||| ||||    
T  20770726 attatgataactaattttaaggaattgaatccatgactcttcaattccaaattccttcatttgccata 20770659  T

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Target: scaffold0354 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0354
Description:

Target: scaffold0354; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 237 - 299
Target Start/End: Complemental strand, 7534 - 7472
Alignment:
Q  237 gataactaattttaaataattgaacccaagactcttgaacaccaaaatccttcatttggcata 299  Q
    |||| ||||||||||  ||||||||||||||||| | ||| ||||| ||||||||||| ||||    
T  7534 gatagctaattttaaggaattgaacccaagactcatcaactccaaattccttcatttgccata 7472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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