View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0834_low_26 (Length: 346)
Name: NF0834_low_26
Description: NF0834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0834_low_26 |
 | |
|
| [»] chr6 (10 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 264; Significance: 1e-147; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 35 - 346
Target Start/End: Original strand, 32683384 - 32683694
Alignment:
| Q |
35 |
catctaaggcagctgaagttccaaatgaagaaggtacatctaaggcagctgaagttccaaaccagctggagaatgaagcttaagatgaaagaaatccaaa |
134 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
32683384 |
catctaaggcagctgaagttccaattgaagaaggtacatctaaggcagctcaagttccaaaccagcaggagaatgaagcttaagatgaaagat-tccaaa |
32683482 |
T |
|
| Q |
135 |
agccgaagttcaaataaaggatgttgaaggctgtaaataaaattaggcagttgtgtagagtaagaaaggaaaactgaactacgttttgttttatccttaa |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
32683483 |
agccgaagttcaaataaaggatgttgaaggctgtaaataaaattaggcagttgtgtagagtaagaaaggaaaactgaactatgttctgttttatccttaa |
32683582 |
T |
|
| Q |
235 |
gttgtgagtgttagacacttgggaagtgccaagctcgcaaatcttgtctatgcgtgtctggttattatgtactgattcctatatatatatcgcaatgtgt |
334 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
32683583 |
gttgtgagttttagacacttgggaagtgccaagctcgcaaatcttgtctatgcgtgtctggttattatgtactgattcctatataactatcgtaatgtgt |
32683682 |
T |
|
| Q |
335 |
cggtaatattat |
346 |
Q |
| |
|
|||||||||||| |
|
|
| T |
32683683 |
cggtaatattat |
32683694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 35 - 319
Target Start/End: Original strand, 32685094 - 32685377
Alignment:
| Q |
35 |
catctaaggcagctgaagttccaaatgaagaaggtacatctaaggcagctgaagttccaaaccagctggagaatgaagcttaagatgaaagaaatccaaa |
134 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
32685094 |
catctaaggcagctgaagttccaattgaagaaggtacatctaaggcagctcaagttccaaaccagcaggagaatgaagcttaagatgaaagat-tccaaa |
32685192 |
T |
|
| Q |
135 |
agccgaagttcaaataaaggatgttgaaggctgtaaataaaattaggcagttgtgtagagtaagaaaggaaaactgaactacgttttgttttatccttaa |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
32685193 |
agccgaagttcaaataaaggatgttgaaggctgtaaataaaattaggcagttgtgtatagtaagaaaggaaaactgaactatgttctgttttatccttaa |
32685292 |
T |
|
| Q |
235 |
gttgtgagtgttagacacttgggaagtgccaagctcgcaaatcttgtctatgcgtgtctggttattatgtactgattcctatata |
319 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32685293 |
gttgtgagttttagacacttgggaagtgccaagctcgcaaatcttgtctatgcgtgtctggttattatgtactgattcctatata |
32685377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 142 - 307
Target Start/End: Complemental strand, 33010825 - 33010662
Alignment:
| Q |
142 |
gttcaaataaaggatgttgaaggctgtaaataaaattaggcagttgtgtagagtaagaaaggaaaactgaactacgttttgttttatccttaagttgtga |
241 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||| | ||| ||||||| ||| |||||||||| ||||||||| |
|
|
| T |
33010825 |
gttcaaataaaggatgttgaagg-tgtaaataaaattaagcagttgtgtggagtaagaaaaggaaattgaactatgttccgttttatcctcaagttgtga |
33010727 |
T |
|
| Q |
242 |
gtgttagacacttgggaagtgccaagctcgcaaatctt-gtctatgcgtgtctggttattatgtact |
307 |
Q |
| |
|
| |||| |||||||||| |||||||| ||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
33010726 |
--gatagatacttgggaagagccaagcttgcaaatcttggtctatgcgtgtttggttattatgtact |
33010662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 32683386 - 32683444
Alignment:
| Q |
1 |
tctaaggcagctgaagttccaaatgaagaaggtacatctaaggcagctgaagttccaaa |
59 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
32683386 |
tctaaggcagctgaagttccaattgaagaaggtacatctaaggcagctcaagttccaaa |
32683444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 32685096 - 32685154
Alignment:
| Q |
1 |
tctaaggcagctgaagttccaaatgaagaaggtacatctaaggcagctgaagttccaaa |
59 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
32685096 |
tctaaggcagctgaagttccaattgaagaaggtacatctaaggcagctcaagttccaaa |
32685154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 59 - 132
Target Start/End: Complemental strand, 33010943 - 33010870
Alignment:
| Q |
59 |
atgaagaaggtacatctaaggcagctgaagttccaaaccagctggagaatgaagcttaagatgaaagaaatcca |
132 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||| |||| | |||||||||||||||||| ||||| |
|
|
| T |
33010943 |
atgaaaaagctacatctaaggcagctgaagttccaaaccagcaggagtacgaagcttaagatgaaagacatcca |
33010870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 81 - 135
Target Start/End: Original strand, 33011205 - 33011259
Alignment:
| Q |
81 |
agctgaagttccaaaccagctggagaatgaagcttaagatgaaagaaatccaaaa |
135 |
Q |
| |
|
|||||||||||||||||||| |||||| |||| |||||| ||||||||||||||| |
|
|
| T |
33011205 |
agctgaagttccaaaccagcaggagaacgaagattaagaagaaagaaatccaaaa |
33011259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 319
Target Start/End: Complemental strand, 34925256 - 34925142
Alignment:
| Q |
211 |
aactacgttttgttttatccttaagttgtgagtgttagacacttggga-agtg----ccaagctcgcaaatctt-gtctatgcgtgtctggttattatgt |
304 |
Q |
| |
|
||||| |||| |||||||| | |||||||||||||||||||||||||| ||| |||||||| |||||||| ||||||| |||||| |||||| ||| |
|
|
| T |
34925256 |
aactatgtttagttttatcatgaagttgtgagtgttagacacttgggagggtgataaccaagctctcaaatcttggtctatgtgtgtcttgttattctgt |
34925157 |
T |
|
| Q |
305 |
actgattcctatata |
319 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
34925156 |
actatttcctatata |
34925142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 135
Target Start/End: Original strand, 28734759 - 28734811
Alignment:
| Q |
83 |
ctgaagttccaaaccagctggagaatgaagcttaagatgaaagaaatccaaaa |
135 |
Q |
| |
|
|||||||||||||||||| | ||| ||||||||| ||||||| | |||||||| |
|
|
| T |
28734759 |
ctgaagttccaaaccagcagaagattgaagcttatgatgaaaaacatccaaaa |
28734811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 33010943 - 33010907
Alignment:
| Q |
23 |
atgaagaaggtacatctaaggcagctgaagttccaaa |
59 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
33010943 |
atgaaaaagctacatctaaggcagctgaagttccaaa |
33010907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1530 times since January 2019
Visitors: 6144