View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0834_low_27 (Length: 335)
Name: NF0834_low_27
Description: NF0834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0834_low_27 |
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| [»] chr6 (8 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 93 - 335
Target Start/End: Complemental strand, 2439699 - 2439457
Alignment:
| Q |
93 |
ataccaagattgtctgatactttcatgacgtgggccttgttgggctttttcaagcattttgaggattctattttgtgatgaaaaagatgtgatggttctt |
192 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2439699 |
ataccaagattgtctgatactttcatgacgtgggccttgttgggctttttcaagcattttgaggattctattttgtgatgaaaaagatgtgatgattctt |
2439600 |
T |
|
| Q |
193 |
agatttgaaacagcttcagcagctattttgctactgtcatcttgagccttaatggctttacttgacatgttattaagaagaacacgtcttgtgtagtaac |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2439599 |
agatttgaaacagcttcagcagctattttgctactgtcatcttgagccttaatggctttacttgacatgttattaagaagaacacgtcttgtgtagtaac |
2439500 |
T |
|
| Q |
293 |
aaaaaatggtaattggttgaactgatatcataacaatggatag |
335 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2439499 |
aaaaaatggtaattggttgaactgatatcataacaatggatag |
2439457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 95 - 331
Target Start/End: Original strand, 2569624 - 2569860
Alignment:
| Q |
95 |
accaagattgtctgatactttcatgacgtgggccttgttgggctttttcaagcattttgaggattctattttgtgatgaaaaagatgtgatggttcttag |
194 |
Q |
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||||||| ||||| | ||||||||||| |||||||||||||| ||||||||||||||||| ||||||| ||| |||||||||| ||||||||||||| |
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| T |
2569624 |
accaagactgtctaacactttcatgactcgggccttgttgggccttttcaagcattttgagaattctatcttgagatgaaaaagcattgatggttcttag |
2569723 |
T |
|
| Q |
195 |
atttgaaacagcttcagcagctattttgctactgtcatcttgagccttaatggctttacttgacatgttattaagaagaacacgtcttgtgtagtaacaa |
294 |
Q |
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|||||||||||||||||||||||||||||||| | |||||||||||| |||||||| ||||||||||| |||||||| ||||| ||||||||| ||||| |
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| T |
2569724 |
atttgaaacagcttcagcagctattttgctacactgatcttgagccttgatggctttgcttgacatgttcttaagaaggacacgccttgtgtagaaacaa |
2569823 |
T |
|
| Q |
295 |
aaaatggtaattggttgaactgatatcataacaatgg |
331 |
Q |
| |
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||||| ||| ||||||||||| |||||||||||||| |
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| T |
2569824 |
taaatgataagtggttgaactgctatcataacaatgg |
2569860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 93 - 331
Target Start/End: Complemental strand, 2591648 - 2591410
Alignment:
| Q |
93 |
ataccaagattgtctgatactttcatgacgtgggccttgttgggctttttcaagcattttgaggattctattttgtgatgaaaaagatgtgatggttctt |
192 |
Q |
| |
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||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||| ||||||| ||| |||||||||| ||||||||||| |
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| T |
2591648 |
ataccaagattgtctaatactttcatgacttgggccttgttgggatttttcaagcattttgagaattctatcttgagatgaaaaagcattgatggttctt |
2591549 |
T |
|
| Q |
193 |
agatttgaaacagcttcagcagctattttgctactgtcatcttgagccttaatggctttacttgacatgttattaagaagaacacgtcttgtgtagtaac |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||| ||||||||||| ||||||| |||| ||||| ||| ||| |
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| T |
2591548 |
agatttgaaacagcttcagcagctattttgctacattcatcttgggccttgatggcttttcttgacatgttcctaagaaggacacaccttgtatagaaac |
2591449 |
T |
|
| Q |
293 |
aaaaaatggtaattggttgaactgatatcataacaatgg |
331 |
Q |
| |
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|| | ||| ||| ||||||||||| |||||||||||||| |
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| T |
2591448 |
aacatatgataactggttgaactgctatcataacaatgg |
2591410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 103 - 331
Target Start/End: Original strand, 2673007 - 2673235
Alignment:
| Q |
103 |
tgtctgatactttcatgacgtgggccttgttgggctttttcaagcattttgaggattctattttgtgatgaaaaagatgtgatggttcttagatttgaaa |
202 |
Q |
| |
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||||| ||||||||||| | ||| |||||||| |||||||||||||||||||| ||||||| ||| |||||||||| ||||||||||||||||||||| |
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| T |
2673007 |
tgtctaatactttcatggcttggtccttgttgtgctttttcaagcattttgagaattctatcttgagatgaaaaagcattgatggttcttagatttgaaa |
2673106 |
T |
|
| Q |
203 |
cagcttcagcagctattttgctactgtcatcttgagccttaatggctttacttgacatgttattaagaagaacacgtcttgtgtagtaacaaaaaatggt |
302 |
Q |
| |
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| |||||||||||||||||||||| |||||||| ||||| |||||||| ||||||||||| |||||||| ||||||||||| ||| ||||| | ||| | |
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| T |
2673107 |
ctgcttcagcagctattttgctacattcatcttgggccttgatggctttgcttgacatgttcttaagaaggacacgtcttgtatagaaacaacatatgat |
2673206 |
T |
|
| Q |
303 |
aattggttgaactgatatcataacaatgg |
331 |
Q |
| |
|
|| ||||||||||| |||||||||||||| |
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| T |
2673207 |
aactggttgaactgctatcataacaatgg |
2673235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 93 - 331
Target Start/End: Complemental strand, 2623192 - 2622954
Alignment:
| Q |
93 |
ataccaagattgtctgatactttcatgacgtgggccttgttgggctttttcaagcattttgaggattctattttgtgatgaaaaagatgtgatggttctt |
192 |
Q |
| |
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||||||||||||||| ||||||||||||| |||||||||||| | |||||||||||||||||| ||| | | ||| |||||||||| ||||||||||| |
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|
| T |
2623192 |
ataccaagattgtctaatactttcatgacttgggccttgttgagatttttcaagcattttgagaattatttcttgagatgaaaaagcattgatggttctt |
2623093 |
T |
|
| Q |
193 |
agatttgaaacagcttcagcagctattttgctactgtcatcttgagccttaatggctttacttgacatgttattaagaagaacacgtcttgtgtagtaac |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| ||||| | |||||| ||||||| || |||||||| ||| ||||||||| ||| |
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| T |
2623092 |
agatttgaaacagcttcagcagctattttgctacattcatcttgggccttgacggctttgtttgacatattcttaagaaggacaaaccttgtgtagaaac |
2622993 |
T |
|
| Q |
293 |
aaaaaatggtaattggttgaactgatatcataacaatgg |
331 |
Q |
| |
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|| | ||| ||||||||||||||| |||||||||||||| |
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| T |
2622992 |
aatatatgataattggttgaactgctatcataacaatgg |
2622954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 103 - 331
Target Start/End: Original strand, 2597191 - 2597416
Alignment:
| Q |
103 |
tgtctgatactttcatgacgtgggccttgttgggctttttcaagcattttgaggattctattttgtgatgaaaaagatgtgatggttcttagatttgaaa |
202 |
Q |
| |
|
||||| ||||||||||| | ||| |||||| |||||||| ||||||||||| ||||||| ||| |||||||||| ||||||||||||||||||||| |
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| T |
2597191 |
tgtctaatactttcatggcttggtccttgt---gctttttctagcattttgagaattctatcttgagatgaaaaagcattgatggttcttagatttgaaa |
2597287 |
T |
|
| Q |
203 |
cagcttcagcagctattttgctactgtcatcttgagccttaatggctttacttgacatgttattaagaagaacacgtcttgtgtagtaacaaaaaatggt |
302 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |||||||| ||| ||||||| |||||||| ||||| ||||| ||| ||||| | || | |
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| T |
2597288 |
cagcttcagcagctattttgctacactcatcttgagccttgatggctttgcttaacatgttcttaagaaggacacgccttgtatagaaacaacatataat |
2597387 |
T |
|
| Q |
303 |
aattggttgaactgatatcataacaatgg |
331 |
Q |
| |
|
|| |||||| ||| |||||||||||||| |
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| T |
2597388 |
aactggttgcactactatcataacaatgg |
2597416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 95 - 331
Target Start/End: Original strand, 2641839 - 2642075
Alignment:
| Q |
95 |
accaagattgtctgatactttcatgacgtgggccttgttgggctttttcaagcattttgaggattctattttgtgatgaaaaagatgtgatggttcttag |
194 |
Q |
| |
|
||||||| ||||| ||||||||||||| |||||||| || |||||| |||| |||||||||||||||| ||| ||||||||| |||||||||| || |
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| T |
2641839 |
accaagactgtctaatactttcatgactagggccttgctgagcttttccaagaattttgaggattctatcttgagatgaaaaactattgatggttctaag |
2641938 |
T |
|
| Q |
195 |
atttgaaacagcttcagcagctattttgctactgtcatcttgagccttaatggctttacttgacatgttattaagaagaacacgtcttgtgtagtaacaa |
294 |
Q |
| |
|
||||| ||||||||||| ||||||||| |||| |||||||| ||||| |||||||| |||||||| || || ||||| ||||| ||||||||| ||||| |
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| T |
2641939 |
atttgtaacagcttcagaagctattttactacattcatcttgggccttgatggctttgcttgacatattcttgagaaggacacgccttgtgtagaaacaa |
2642038 |
T |
|
| Q |
295 |
aaaatggtaattggttgaactgatatcataacaatgg |
331 |
Q |
| |
|
| ||| ||| |||||||||| |||||||||||||| |
|
|
| T |
2642039 |
catatgataaggggttgaactgctatcataacaatgg |
2642075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 95 - 335
Target Start/End: Complemental strand, 2450422 - 2450182
Alignment:
| Q |
95 |
accaagattgtctgatactttcatgacgtgggccttgttgggctttttcaagcattttgaggattctattttgtgatgaaaaagatgtgatggttcttag |
194 |
Q |
| |
|
||||||||||||| || ||||||||| |||||||||||||||||||||||| ||||| || ||||||| ||| |||||||||| || |||||||| | |
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| T |
2450422 |
accaagattgtctaatgttttcatgacttgggccttgttgggctttttcaagaatttttagaattctatcttgagatgaaaaagcagttatggttctaat |
2450323 |
T |
|
| Q |
195 |
atttgaaacagcttcagcagctattttgctactgtcatcttgagccttaatggctttacttgacatgttattaagaagaacacgtcttgtgtagtaacaa |
294 |
Q |
| |
|
||| |||||||||||| | |||||||||||||| | |||||| || | ||| ||||| |||||||| | |||||||| || ||||||||| ||||| |
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| T |
2450322 |
attcgaaacagcttcaactgctattttgctacttttatcttgggcttcaattgcttttcttgacattctcttaagaagggaactccttgtgtagaaacaa |
2450223 |
T |
|
| Q |
295 |
aaaatggtaattggttgaactgatatcataacaatggatag |
335 |
Q |
| |
|
| ||| |||||||||||||| |||||||||||| ||||| |
|
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| T |
2450222 |
accatgtgaattggttgaactgctatcataacaattgatag |
2450182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 123 - 227
Target Start/End: Original strand, 17871066 - 17871170
Alignment:
| Q |
123 |
tgggccttgttgggctttttcaagcattttgaggattctattttgtgatgaaaaagatgtgatggttcttagatttgaaacagcttcagcagctattttg |
222 |
Q |
| |
|
|||| ||||||||| |||||||||||||||| ||||||| ||| || ||||||| || |||||||| ||||||||||||||||||||||||| || |
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| T |
17871066 |
tgggtcttgttgggaggtttcaagcattttgagtattctatcttgagaagaaaaagcagttatggttctatgatttgaaacagcttcagcagctatctta |
17871165 |
T |
|
| Q |
223 |
ctact |
227 |
Q |
| |
|
||||| |
|
|
| T |
17871166 |
ctact |
17871170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 331
Target Start/End: Complemental strand, 53393648 - 53393463
Alignment:
| Q |
149 |
ttttgaggattctattttgtgatgaaaaagatgtgatggttcttagatttgaaacagcttcagcagctattttgctactgtcatcttgagccttaatgg- |
247 |
Q |
| |
|
||||||||||| || ||| |||||||||| |||||||||| ||||||| |||| ||| | ||||||||| |||| |||||||| ||||| |||| |
|
|
| T |
53393648 |
ttttgaggatttgatcttgggatgaaaaagcattgatggttctaagatttgtaacaactttcgaagctattttactacattcatcttgggccttgatggc |
53393549 |
T |
|
| Q |
248 |
--ctttacttgacatgttattaagaagaacacgtcttgtgtagtaacaaaaaatggtaattggttgaactgatatcataacaatgg |
331 |
Q |
| |
|
|||| |||||||| || || ||||| | |||||||| ||| ||| | | ||| ||| ||||| |||| |||||||||||||| |
|
|
| T |
53393548 |
gcctttgcttgacatattcttgagaaggatgcgtcttgtatagaaactacagatgataagtggttttactgctatcataacaatgg |
53393463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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