View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0834_low_28 (Length: 332)
Name: NF0834_low_28
Description: NF0834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0834_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 102 - 153
Target Start/End: Original strand, 32577989 - 32578040
Alignment:
| Q |
102 |
caatatcaatatgtttagcacttacaaaacaaagattgcgacaaaattataa |
153 |
Q |
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| T |
32577989 |
caatatcaatatgtttagcacttacaaaacaaagattaagacaaaattataa |
32578040 |
T |
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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 240
Target Start/End: Original strand, 32578064 - 32578127
Alignment:
| Q |
177 |
cttattgaattttctcaaacttattatcgtgtttggtatttgnnnnnnngtatatagtagtatg |
240 |
Q |
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| T |
32578064 |
cttattgaattttctcaaacttattatcgtgtttggtatttgtttttttgtatatagtagtatg |
32578127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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