View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0834_low_29 (Length: 332)
Name: NF0834_low_29
Description: NF0834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0834_low_29 |
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| [»] scaffold0002 (1 HSPs) |
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| [»] scaffold0902 (1 HSPs) |
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| [»] scaffold1652 (1 HSPs) |
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| [»] scaffold1176 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 156; Significance: 7e-83; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 81 - 248
Target Start/End: Original strand, 165060 - 165227
Alignment:
| Q |
81 |
gctgttgctcgatcaccaccatcatccccccagtcttctccgtttccatcacctgctatttctccctctgctgactcacaagtggcgtcttctccggtac |
180 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
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| T |
165060 |
gctgttgctcgatcaccaccatcatccccccagtcttctccgtttccatcacctgctatttctccctccgctgactcaccagtggcgtcttctccggtac |
165159 |
T |
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| Q |
181 |
ctctgaatagtgctccctctccttcaccgtctgcttcctctggttctcctgctgtcgctccatcctgg |
248 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
165160 |
ctctgaatagtgctccctctccttcaccgtctgctttctctggttctcctgctgtcgctccatcctgg |
165227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 156; Significance: 7e-83; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 81 - 248
Target Start/End: Complemental strand, 14248666 - 14248499
Alignment:
| Q |
81 |
gctgttgctcgatcaccaccatcatccccccagtcttctccgtttccatcacctgctatttctccctctgctgactcacaagtggcgtcttctccggtac |
180 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
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| T |
14248666 |
gctgttgctcgatcaccaccatcatccccccagtcttctccgtttccatcacctgctatttctccctccgctgactcaccagtggcgtcttctccggtac |
14248567 |
T |
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| Q |
181 |
ctctgaatagtgctccctctccttcaccgtctgcttcctctggttctcctgctgtcgctccatcctgg |
248 |
Q |
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| T |
14248566 |
ctctgaatagtgctccctctccttcaccgtctgctttctctggttctcctgctgtcgctccatcctgg |
14248499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 156 - 234
Target Start/End: Complemental strand, 14317165 - 14317087
Alignment:
| Q |
156 |
tcacaagtggcgtcttctccggtacctctgaatagtgctccctctccttcaccgtctgcttcctctggttctcctgctg |
234 |
Q |
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|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14317165 |
tcaccagtggcgtctcctccggtacctctgaatagtgctccctctccttcaccgtctgcttcctctggttctcctgctg |
14317087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 81 - 133
Target Start/End: Complemental strand, 14317213 - 14317161
Alignment:
| Q |
81 |
gctgttgctcgatcaccaccatcatccccccagtcttctccgtttccatcacc |
133 |
Q |
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| T |
14317213 |
gctgttgctcgatcaccaccatcatcacccaagtcttctccgtttccatcacc |
14317161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0902 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: scaffold0902
Description:
Target: scaffold0902; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 101 - 234
Target Start/End: Complemental strand, 3762 - 3629
Alignment:
| Q |
101 |
atcatccccccagtcttctccgtttccatcacctgctatttctccctctgctgactcacaagtggcgtcttctccggtacctctgaatagtgctccctct |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
3762 |
atcatcccccaagtcttctccgtttccatcacctgctatttctccctccgctgactcaccagtggcgtctcctccggtacctctgaatagtgctccctct |
3663 |
T |
|
| Q |
201 |
ccttcaccgtctgcttcctctggttctcctgctg |
234 |
Q |
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||||||| ||||||| ||||||||||| |||| |
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| T |
3662 |
tcttcaccaactgcttcatctggttctcccgctg |
3629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1652 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold1652
Description:
Target: scaffold1652; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 84 - 234
Target Start/End: Original strand, 30 - 180
Alignment:
| Q |
84 |
gttgctcgatcaccaccatcatccccccagtcttctccgtttccatcacctgctatttctccctctgctgactcacaagtggcgtcttctccggtacctc |
183 |
Q |
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|||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||| || |
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| T |
30 |
gttgctagatcaccaccatcatcacccaagtcttctccgtttccatcacctgctatttctccctccgctgactcaccagtggcgtctcctccggtaactg |
129 |
T |
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| Q |
184 |
tgaatagtgctccctctccttcaccgtctgcttcctctggttctcctgctg |
234 |
Q |
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||||||||||||||||| ||| | || ||||||| ||||||||||| |||| |
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| T |
130 |
tgaatagtgctccctcttctttaacgactgcttcatctggttctcccgctg |
180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1176 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold1176
Description:
Target: scaffold1176; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 92 - 158
Target Start/End: Original strand, 1254 - 1320
Alignment:
| Q |
92 |
atcaccaccatcatccccccagtcttctccgtttccatcacctgctatttctccctctgctgactca |
158 |
Q |
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||||||| || |||||||| ||||||||||||||||||| ||||| ||||||||||| ||| ||||| |
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| T |
1254 |
atcaccatcaacatcccccaagtcttctccgtttccatctcctgcgatttctccctcagctaactca |
1320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 84 - 175
Target Start/End: Complemental strand, 37245382 - 37245288
Alignment:
| Q |
84 |
gttgctcgatcaccaccatcatc--ccccca-gtcttctccgtttccatcacctgctatttctccctctgctgactcacaagtggcgtcttctcc |
175 |
Q |
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||||||||||||||||||||||| | |||| || |||||||||||||||||| ||||||||||| ||| |||||| |||||| ||| |||| |
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| T |
37245382 |
gttgctcgatcaccaccatcatcatcgcccatgttttctccgtttccatcaccaataatttctccctccgctaactcaccagtggcatctgctcc |
37245288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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