View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0834_low_3 (Length: 552)
Name: NF0834_low_3
Description: NF0834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0834_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 424; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 71 - 542
Target Start/End: Complemental strand, 33235508 - 33235037
Alignment:
| Q |
71 |
ctcaaacaaactaaaaacaataatgcataattttaaattgcggtctgcaaccacaattgcgcaatataaaagttttagagatttctacaacagcgtcgca |
170 |
Q |
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| T |
33235508 |
ctcaaataaactaaaaacaataatgcataattttaaattgcggtctgcaaccacaattgcgcaatataaaagttttagagatttctacaacagcgtcgca |
33235409 |
T |
|
| Q |
171 |
actgcaattgctgccacatcgatagtattttactgcaatatcaagacttgcaacgtaactgcgactgcaaccgcaatttaaaatgatgtgatgattttaa |
270 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33235408 |
actgcaattgctgccacatcgatcgtattttactgcaatatcaagacttgcaacgtaactgcgactgcaaccgcaatttaaaatgatgtgatgattttaa |
33235309 |
T |
|
| Q |
271 |
ggagtgatttgaagcatagaagaaaagaaaaagtacctttaacaccagaaagaacatgcttaaccttgcgagcacaaccttcacagtccattctgatttt |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33235308 |
ggagtgatttgaagcatagaagaaaagaaaaagtacctttaacaccagaaagaacatgcttaaccttgcgagcacaaccttcacagtccattctgatttt |
33235209 |
T |
|
| Q |
371 |
aagagatacagtctgagtttgcttcttcnnnnnnnnnnnngtgctactgagtaaatcagacaagtattctaaagtaccttgtacccccatttttctactt |
470 |
Q |
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|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33235208 |
aagagatacagtttgagtttgcttcttctttttcttttttgtgctactgagtaaatcagacaagtattctaaagtaccttgtacccccatttttctactt |
33235109 |
T |
|
| Q |
471 |
cttctttctttccttcacaatgatatgctagcttgctcttataattcaagaaataaattactttggcctttg |
542 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33235108 |
cttctttctttccttcacaatgatatgctagcttgctcttataattcaagaaataaattactttggcctttg |
33235037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 33235824 - 33235763
Alignment:
| Q |
6 |
agattgagcagctttcaacactttctttggtt-aacatatccactcactgttactctctgct |
66 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||| |
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| T |
33235824 |
agattgagcagctttcaacactttctttggttcaacatatccactcaccgttactttctgct |
33235763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 203 - 259
Target Start/End: Original strand, 31165766 - 31165822
Alignment:
| Q |
203 |
ctgcaatatcaagacttgcaacgtaactgcgactgcaaccgcaatttaaaatgatgt |
259 |
Q |
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||||||||| |||| ||||| ||||||||||||| || | ||||||||||| ||||| |
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| T |
31165766 |
ctgcaatataaagatttgcagcgtaactgcgacttcagctgcaatttaaaacgatgt |
31165822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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