View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0834_low_34 (Length: 303)
Name: NF0834_low_34
Description: NF0834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0834_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 14 - 274
Target Start/End: Complemental strand, 34737358 - 34737097
Alignment:
| Q |
14 |
cacaagattgcaaaactgattgttgttagtatttttcttaaaatgaatcgcatcccttctacataaataaatttagactaatgttttacttttgataaaa |
113 |
Q |
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| T |
34737358 |
cacaagattgcaaaattgattgttgttagtatttttcttaaaatgaatcgcatcccttctacataaataaatttagactaatgttttacttttgataaaa |
34737259 |
T |
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| Q |
114 |
tttgtgcagaaaaatctcactgcaagagtggatacaaccgatatcgttgttcatcgcattcgttttggtaggtataaagttgagcaaaatataacaatat |
213 |
Q |
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| T |
34737258 |
tttgtgcagaaaaatctcactgcaagagtggatacaaccggtatcgttgttcatcgcattcgtttaggtatgtataaagttgagcaaaatatagcaatat |
34737159 |
T |
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| Q |
214 |
attgccatatttaatgtatttaatcaattaattgtgttgacagaa-aaacaggagtcgttga |
274 |
Q |
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| T |
34737158 |
attaccatatttaatgtattgaatcaattaattgggctgacagaacaaccaggagtcgttga |
34737097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 4508405 - 4508149
Alignment:
| Q |
18 |
agattgcaaaactgattgttgttagtatttttcttaaaatgaatcgcatcccttctacataaataaatttagactaatgttttacttttgataaaatttg |
117 |
Q |
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| T |
4508405 |
agattgcaaaattgattattgttagtatttttcttaaaatgaatcgcatctcttctccataaataaatttagactaatgttttacttttgataaaaaatt |
4508306 |
T |
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| Q |
118 |
tgcagaaaaatctcactgcaagagtggatacaaccgatatcgttgttcatcgcattcgttttggtaggtataaagttgagcaaaatataacaatatattg |
217 |
Q |
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| T |
4508305 |
tgcacaaaaatctcactgcaagagtggatacaactggtatcattatttatcgtattcgttttggtaggtataaagttgaacaaaatatagcaatataatg |
4508206 |
T |
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| Q |
218 |
ccatatttaatgtatttaatcaattaattgtgttgacaga-aaaacaggagtcgttg |
273 |
Q |
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| T |
4508205 |
tcatatttaatgtatttaatcaattaattgtgttgacagatcaaccaggagtcgttg |
4508149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 18 - 274
Target Start/End: Original strand, 4509440 - 4509702
Alignment:
| Q |
18 |
agattgcaaaactgattgttgttagtatttttctt-aaaatgaatcgcatcccttctacataaataaatttagactaatgttttacttttgataaaattt |
116 |
Q |
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| T |
4509440 |
agattgcaaaactgattgctattagtatttttttttaaaatgaatcgcatcccttcagtataaataaaattggactaatgttttacttt-gttaacattt |
4509538 |
T |
|
| Q |
117 |
gtgcagaaaa-atctcactgcaagagtggatacaaccgatatcgttgttcatcgcattcgttttggtaggtataaa----gttgagcaaaatataacaat |
211 |
Q |
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||||||||| ||||||||||||||||| ||| ||||| |||| |||||||||||||||||||||||||||||||| ||||| ||||||||| |||| |
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| T |
4509539 |
ttgcagaaaaaatctcactgcaagagtgaatataaccggtatcattgttcatcgcattcgttttggtaggtataaagttggttgaacaaaatatagcaat |
4509638 |
T |
|
| Q |
212 |
atattgccatatttaatgtatttaatcaattaattgtgttgacagaa-aaacaggagtcgttga |
274 |
Q |
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| T |
4509639 |
atattgtcatatttaatgtattgaatcaattaattgtgttgacaaaacaaccaggagtcgttga |
4509702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 53 - 274
Target Start/End: Complemental strand, 4492280 - 4492068
Alignment:
| Q |
53 |
aaaatgaatcgcatcccttctacataaataaatttagactaatgttttacttttgataaaatttgtgcagaaaaatctcactgcaagagtggatacaacc |
152 |
Q |
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| T |
4492280 |
aaaatgaatcgcatcccttctgcataaataaatttagaataatgatttacttttgatacaatttgtgcagaaaaatctcactgcaagagtggatacaacc |
4492181 |
T |
|
| Q |
153 |
gatatcgttgttcatcgcattcgttttggtaggtataaagttgagcaaaatataacaatatattgccatatttaatgtatttaatcaattaattgtgttg |
252 |
Q |
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| T |
4492180 |
agtatcattgttcatcacatttgttttggtaggtataaagttg----------aacaatatattgtcgtatttaatgtattgattcaattaattgtgttg |
4492091 |
T |
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| Q |
253 |
acagaa-aaacaggagtcgttga |
274 |
Q |
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| T |
4492090 |
acagaacaattaggagtcgttga |
4492068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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