View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0834_low_36 (Length: 298)

Name: NF0834_low_36
Description: NF0834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0834_low_36
NF0834_low_36
[»] chr8 (16 HSPs)
chr8 (36-274)||(25469620-25469858)
chr8 (36-201)||(25688062-25688227)
chr8 (42-201)||(25330916-25331075)
chr8 (93-269)||(25500808-25500983)
chr8 (30-201)||(25710701-25710872)
chr8 (93-233)||(25419766-25419904)
chr8 (93-269)||(24890629-24890804)
chr8 (93-269)||(25635083-25635258)
chr8 (93-233)||(25428106-25428244)
chr8 (30-174)||(25738037-25738181)
chr8 (87-233)||(25485695-25485839)
chr8 (93-233)||(25825532-25825670)
chr8 (30-174)||(25730551-25730695)
chr8 (93-173)||(24917343-24917423)
chr8 (30-121)||(25433372-25433463)
chr8 (105-174)||(22880931-22881000)
[»] scaffold0070 (1 HSPs)
scaffold0070 (30-233)||(41432-41633)
[»] chr1 (1 HSPs)
chr1 (98-193)||(23394571-23394666)
[»] chr4 (1 HSPs)
chr4 (31-124)||(10331900-10331993)


Alignment Details
Target: chr8 (Bit Score: 175; Significance: 3e-94; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 36 - 274
Target Start/End: Complemental strand, 25469858 - 25469620
Alignment:
Q  36 ccccaatctattggtaacctttatcagttgaaagaattgcatactgctcataacagtttgtctggacccatacctcaatcaatttcaaatttgtcctcac 135  Q
    ||||||||||||||||| |||  ||||||||||| |||| |||||  ||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  25469858 ccccaatctattggtaaacttcgtcagttgaaagtattggatacttttcagaacagattgtctggacccatacctcaatcaatttcaaatttgtcctcac 25469759  T
Q  136 ttgaatatatcggtttatcattcaactacttttcaggtaatcctaacactgatattatgtgtcatatttgctatatatttcttgtagtcacactatttca 235  Q
    |||||||||||| |||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||     
T  25469758 ttgaatatatcgatttatcatccaactacttttcaggtactcctagcactgatattatgtgtcatatttgctatatatttcttgtagtcacattatttct 25469659  T
Q  236 gatgttagaatttaatataagatttattcctccttctat 274  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  25469658 gatgttagaatttaatataggatttattcctccttctat 25469620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 36 - 201
Target Start/End: Complemental strand, 25688227 - 25688062
Alignment:
Q  36 ccccaatctattggtaacctttatcagttgaaagaattgcatactgctcataacagtttgtctggacccatacctcaatcaatttcaaatttgtcctcac 135  Q
    ||||||||||||||||| |||  |||||||||||||||| |||||  ||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  25688227 ccccaatctattggtaaacttcgtcagttgaaagaattggatactattcaaaacagattgtctggacccatacctcaatcaatttcaaatttgtcctcac 25688128  T
Q  136 ttgaatatatcggtttatcattcaactacttttcaggtaatcctaacactgatattatgtgtcata 201  Q
    |||||  |||||||||||| ||||||||||||||||||| | ||||| ||||||||||||||||||    
T  25688127 ttgaacgtatcggtttatctttcaactacttttcaggtacttctaactctgatattatgtgtcata 25688062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 42 - 201
Target Start/End: Complemental strand, 25331075 - 25330916
Alignment:
Q  42 tctattggtaacctttatcagttgaaagaattgcatactgctcataacagtttgtctggacccatacctcaatcaatttcaaatttgtcctcacttgaat 141  Q
    ||||||||||| |||  || ||||||| | |||||||| ||||| |  ||  |||||||||||||||||||| |||||||||||||||| ||||||||||    
T  25331075 tctattggtaatcttcgtcggttgaaacacttgcataccgctcaaagtaggctgtctggacccatacctcaaacaatttcaaatttgtcttcacttgaat 25330976  T
Q  142 atatcggtttatcattcaactacttttcaggtaatcctaacactgatattatgtgtcata 201  Q
    |||| | |||||| | ||||||||||||||||| ||||| | ||||||||||||||||||    
T  25330975 atattgatttatcttccaactacttttcaggtactcctagctctgatattatgtgtcata 25330916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 93 - 269
Target Start/End: Complemental strand, 25500983 - 25500808
Alignment:
Q  93 ttgtctggacccatacctcaatcaatttcaaatttgtcctcacttgaatatatcggtttatcattcaactacttttcaggtaatcctaacactgatatta 192  Q
    ||||||||||||||||||||| ||||||||||  |||| |||||||||||| | | ||||  | | |||||||||||||||||| ||| | ||||||||     
T  25500983 ttgtctggacccatacctcaaacaatttcaaacatgtcttcacttgaatatcttgctttacaacttaactacttttcaggtaatgctagccctgatattc 25500884  T
Q  193 tgtgtcatatttgctatatatttcttgtagtcacactatttcagatgttagaattt-aatataagatttattcctcct 269  Q
    ||||||||||||  | ||||||||||||| |||||||||||  ||| ||| ||||| |||||| |||||||| |||||    
T  25500883 tgtgtcatattt--tctatatttcttgtattcacactatttatgattttataatttcaatataggatttattactcct 25500808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 30 - 201
Target Start/End: Complemental strand, 25710872 - 25710701
Alignment:
Q  30 tttattccccaatctattggtaacctttatcagttgaaagaattgcatactgctcataacagtttgtctggacccatacctcaatcaatttcaaatttgt 129  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| | |  | ||| ||||   |||||||||||||||||||| |||||| |||  |||    
T  25710872 tttattccccaatctattggtaaccttcatcagttgaaagaattggaaatagatcagaacaagatgtctggacccatacctcaaacaattttaaacatgt 25710773  T
Q  130 cctcacttgaatatatcggtttatcattcaactacttttcaggtaatcctaacactgatattatgtgtcata 201  Q
    | ||||||||| |||||  |||| |  | |||||||||||||||| ||||| | || |||||||||| ||||    
T  25710772 cttcacttgaacatatcaatttagctgttaactacttttcaggtactcctagctctaatattatgtgacata 25710701  T

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Target: chr8; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 93 - 233
Target Start/End: Complemental strand, 25419904 - 25419766
Alignment:
Q  93 ttgtctggacccatacctcaatcaatttcaaatttgtcctcacttgaatatatcggtttatcat-tcaactacttttcaggtaatcctaacactgatatt 191  Q
    |||| |||||||||||||||| ||||||||||  |||| |||||||||||| | |||||| ||| | |||||||||||||||||| ||| | ||||||||    
T  25419904 ttgtttggacccatacctcaaacaatttcaaacatgtcttcacttgaatatcttggttta-catcttaactacttttcaggtaatgctagctctgatatt 25419806  T
Q  192 atgtgtcatatttgctatatatttcttgtagtcacactattt 233  Q
    |||||||||||||  | ||||||||||||| |||||||||||    
T  25419805 atgtgtcatattt--tctatatttcttgtattcacactattt 25419766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 93 - 269
Target Start/End: Original strand, 24890629 - 24890804
Alignment:
Q  93 ttgtctggacccatacctcaatcaatttcaaatttgtcctcacttgaatatatcggtttatcat-tcaactacttttcaggtaatcctaacactgatatt 191  Q
    |||| |||||||||||||||| ||||||||||  |||| |||||||||||| | | |||| ||| | |||||||||||||||||| ||| | ||||||||    
T  24890629 ttgtttggacccatacctcaaacaatttcaaacatgtcttcacttgaatatcttgtttta-catcttaactacttttcaggtaatgctagctctgatatt 24890727  T
Q  192 atgtgtcatatttgctatatatttcttgtagtcacactatttcagatgttagaattt-aatataagatttattcctcct 269  Q
    |||||||||||||  | ||||||||||||| |||||||||||  ||| ||| ||||| |||||  |||||||| |||||    
T  24890728 atgtgtcatattt--tctatatttcttgtattcacactatttatgattttataatttcaatattggatttattactcct 24890804  T

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Target: chr8; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 93 - 269
Target Start/End: Complemental strand, 25635258 - 25635083
Alignment:
Q  93 ttgtctggacccatacctcaatcaatttcaaatttgtcctcacttgaatatatcggtttatcattcaactacttttcaggtaatcctaacactgatatta 192  Q
    ||||||||||||||||||||| ||||||||||  |||| |||||||||||| | ||||||   |  ||||||||||||||||| |||| |  |||| ||     
T  25635258 ttgtctggacccatacctcaaacaatttcaaacatgtcttcacttgaatatcttggtttacagtataactacttttcaggtaaacctagctttgattttc 25635159  T
Q  193 tgtgtcatatttgctatatatttcttgtagtcacactatttcagatgttagaattt-aatataagatttattcctcct 269  Q
    ||||||||||||  | ||||||||||||| |||||||||||  ||| ||| ||||| |||||| |||||||| |||||    
T  25635158 tgtgtcatattt--tctatatttcttgtattcacactatttatgattttataatttcaatataggatttattactcct 25635083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 93 - 233
Target Start/End: Complemental strand, 25428244 - 25428106
Alignment:
Q  93 ttgtctggacccatacctcaatcaatttcaaatttgtcctcacttgaatatatcggttta--tcattcaactacttttcaggtaatcctaacactgatat 190  Q
    |||| |||||||||||||||| ||||||||||  |||| |||||||||||| | | ||||  ||||  |||||||||||||||||| ||| | |||||||    
T  25428244 ttgtttggacccatacctcaaacaatttcaaacatgtcttcacttgaatatcttgatttacatcat--aactacttttcaggtaatgctagctctgatat 25428147  T
Q  191 tatgtgtcatatttgctatatatttcttgtagtcacactattt 233  Q
    ||||||||||||||  | ||||||||||||| |||||||||||    
T  25428146 tatgtgtcatattt--tctatatttcttgtattcacactattt 25428106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 30 - 174
Target Start/End: Complemental strand, 25738181 - 25738037
Alignment:
Q  30 tttattccccaatctattggtaacctttatcagttgaaagaattgcatactgctcataacagtttgtctggacccatacctcaatcaatttcaaatttgt 129  Q
    |||||| |||||||||||||||||||| ||||||||||||||||| | | || ||| ||||   |||||||||||||||||||| |||||| |||  |||    
T  25738181 tttatttcccaatctattggtaaccttcatcagttgaaagaattggaaattggtcagaacaagatgtctggacccatacctcaaacaattttaaacatgt 25738082  T
Q  130 cctcacttgaatatatcggtttatcattcaactacttttcaggta 174  Q
    | ||||||||| |||||  |||| |  | ||||||||||||||||    
T  25738081 cttcacttgaacatatcaatttagctgttaactacttttcaggta 25738037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 87 - 233
Target Start/End: Complemental strand, 25485839 - 25485695
Alignment:
Q  87 aacagtttgtctggacccatacctcaatcaatttcaaatttgtcctcacttgaatatatcggtttatcattcaactacttttcaggtaatcctaacactg 186  Q
    |||| ||||||||||| ||||||||||    |||||||  |||| |||||||||||| | | |||||| | ||||||||||||||||||| | ||| ||     
T  25485839 aacaatttgtctggactcatacctcaaatggtttcaaacatgtcttcacttgaatatctagatttatcttccaactacttttcaggtaataccaactcta 25485740  T
Q  187 atattatgtgtcatatttgctatatatttcttgtagtcacactattt 233  Q
    ||||||||||||||||||  | ||||||||||||| |||||||||||    
T  25485739 atattatgtgtcatattt--tctatatttcttgtattcacactattt 25485695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 93 - 233
Target Start/End: Complemental strand, 25825670 - 25825532
Alignment:
Q  93 ttgtctggacccatacctcaatcaatttcaaatttgtcctcacttgaatatatcggtttatcat-tcaactacttttcaggtaatcctaacactgatatt 191  Q
    ||||||||||||||||||||| ||||||||||  |||| |||||||||||| | | |||  ||| | |||||||||||||||||| ||| | ||||||||    
T  25825670 ttgtctggacccatacctcaaacaatttcaaacatgtcttcacttgaatatcttgttttc-catcttaactacttttcaggtaatgctagctctgatatt 25825572  T
Q  192 atgtgtcatatttgctatatatttcttgtagtcacactattt 233  Q
     ||||||||||||  | ||||||||||||| |||||||||||    
T  25825571 ctgtgtcatattt--tctatatttcttgtattcacactattt 25825532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 30 - 174
Target Start/End: Complemental strand, 25730695 - 25730551
Alignment:
Q  30 tttattccccaatctattggtaacctttatcagttgaaagaattgcatactgctcataacagtttgtctggacccatacctcaatcaatttcaaatttgt 129  Q
    |||||| |||||||||||||||||||| |||||||||||||||||   | || ||  ||||   |||||||||||||||||||| |||||| |||  |||    
T  25730695 tttatttcccaatctattggtaaccttcatcagttgaaagaattgggaattggtcggaacaagatgtctggacccatacctcaaacaattttaaacatgt 25730596  T
Q  130 cctcacttgaatatatcggtttatcattcaactacttttcaggta 174  Q
    | ||||||||| |||||  |||| |  | ||||||||||||||||    
T  25730595 cttcacttgaacatatcaatttagctgttaactacttttcaggta 25730551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 93 - 173
Target Start/End: Original strand, 24917343 - 24917423
Alignment:
Q  93 ttgtctggacccatacctcaatcaatttcaaatttgtcctcacttgaatatatcggtttatcattcaactacttttcaggt 173  Q
    |||||| ||| |||||||||| ||||||||||  |||| |||||||||||| | |||||| | ||||||||||||||||||    
T  24917343 ttgtctagactcatacctcaaacaatttcaaacatgtcttcacttgaatatcttggtttacctttcaactacttttcaggt 24917423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 121
Target Start/End: Complemental strand, 25433463 - 25433372
Alignment:
Q  30 tttattccccaatctattggtaacctttatcagttgaaagaattgcatactgctcataacagtttgtctggacccatacctcaatcaatttc 121  Q
    ||||||||||||||||| ||||||||| ||  ||||| ||||||| ||||    || ||||  ||||||||||||||||||||| |||||||    
T  25433463 tttattccccaatctatcggtaaccttcatgggttgatagaattggataccatacagaacaagttgtctggacccatacctcaaacaatttc 25433372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 174
Target Start/End: Original strand, 22880931 - 22881000
Alignment:
Q  105 atacctcaatcaatttcaaatttgtcctcacttgaatatatcggtttatcattcaactacttttcaggta 174  Q
    ||||||||| ||||||||||| |||| |||||||||||| |||| || || |  ||||||||||||||||    
T  22880931 atacctcaaacaatttcaaatatgtcttcacttgaatatgtcggcttctcttctaactacttttcaggta 22881000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 30 - 233
Target Start/End: Original strand, 41432 - 41633
Alignment:
Q  30 tttattccccaatctattggtaacctttatcagttgaaagaattgcatactgctcataacagtttgtctggacccatacctcaatcaatttcaaatttgt 129  Q
    ||||| ||||||||||||||||||||| | | |||||||| |||| | | || ||| || | | ||||||  ||||||||||||  | |||||||  |||    
T  41432 tttatcccccaatctattggtaaccttcaccggttgaaagcattgaaaattggtcagaataatatgtctgatcccatacctcaaggagtttcaaacatgt 41531  T
Q  130 cctcacttgaatatatcggtttatcattcaactacttttcaggtaatcctaacactgatattatgtgtcatatttgctatatatttcttgtagtcacact 229  Q
    | || ||||||||| ||| |||||| | ||||||||||||||||||| | | | ||||||||||||| |||||||  |  ||||||||| || |||||||    
T  41532 cttctcttgaatatctcgatttatcgtccaactacttttcaggtaatgcaagctctgatattatgtggcatattt--tcaatatttcttatattcacact 41629  T
Q  230 attt 233  Q
    ||||    
T  41630 attt 41633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 98 - 193
Target Start/End: Original strand, 23394571 - 23394666
Alignment:
Q  98 tggacccatacctcaatcaatttcaaatttgtcctcacttgaatatatcggtttatcattcaactacttttcaggtaatcctaacactgatattat 193  Q
    |||||||||||||||| ||||||||||  |||| |||||| ||||||| |||||||| |  |||||||||||||||| ||||||| || |||||||    
T  23394571 tggacccatacctcaaacaatttcaaacatgtcttcacttaaatatattggtttatcttctaactacttttcaggtactcctaactctaatattat 23394666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 124
Target Start/End: Complemental strand, 10331993 - 10331900
Alignment:
Q  31 ttattccccaatctattggtaacctttatcagttgaaagaattgcatactgctcataacagtttgtctggacccatacctcaatcaatttcaaa 124  Q
    |||| ||||| |||||||| |||||| |   ||||||||||||| |||||  | | |||||  | ||||| |||||||||||||||||||||||    
T  10331993 ttatcccccagtctattggcaaccttcagaggttgaaagaattggatactagttacaacagactatctgggcccatacctcaatcaatttcaaa 10331900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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