View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0834_low_4 (Length: 549)

Name: NF0834_low_4
Description: NF0834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0834_low_4
NF0834_low_4
[»] chr6 (2 HSPs)
chr6 (6-145)||(32684091-32684230)
chr6 (6-44)||(32692090-32692128)
[»] scaffold1113 (2 HSPs)
scaffold1113 (6-83)||(57-134)
scaffold1113 (12-44)||(1872-1904)
[»] chr7 (7 HSPs)
chr7 (404-544)||(6245606-6245746)
chr7 (448-544)||(6175668-6175764)
chr7 (448-545)||(6103975-6104072)
chr7 (456-499)||(6092567-6092610)
chr7 (445-499)||(6087264-6087318)
chr7 (465-499)||(6092654-6092688)
chr7 (463-499)||(6232821-6232857)
[»] scaffold0961 (1 HSPs)
scaffold0961 (12-44)||(1713-1745)


Alignment Details
Target: chr6 (Bit Score: 140; Significance: 4e-73; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 6 - 145
Target Start/End: Complemental strand, 32684230 - 32684091
Alignment:
Q  6 aacttagaatcaaaattattgttagagaaaaacttgccttgaatgctaaatcagcatccggctcattcatgcgtctacaatttatcttcgaccaaatttg 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32684230 aacttagaatcaaaattattgttagagaaaaacttgccttgaatgctaaatcagcatccggctcattcatgcgtctacaatttatcttcgaccaaatttg 32684131  T
Q  106 agattcttacaatgatatccacacaccttcatgtcaaatt 145  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  32684130 agattcttacaatgatatccacacaccttcatgtcaaatt 32684091  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 32692128 - 32692090
Alignment:
Q  6 aacttagaatcaaaattattgttagagaaaaacttgcct 44  Q
    |||||||||||||||||||||||||||||||||||||||    
T  32692128 aacttagaatcaaaattattgttagagaaaaacttgcct 32692090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1113 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: scaffold1113
Description:

Target: scaffold1113; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 6 - 83
Target Start/End: Original strand, 57 - 134
Alignment:
Q  6 aacttagaatcaaaattattgttagagaaaaacttgccttgaatgctaaatcagcatccggctcattcatgcgtctac 83  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  57 aacttagaatcaaaattattgttagagaaaaacttgcctcgaatgctaaatcagcatccggctcattcacgcgtctac 134  T

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Target: scaffold1113; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 12 - 44
Target Start/End: Original strand, 1872 - 1904
Alignment:
Q  12 gaatcaaaattattgttagagaaaaacttgcct 44  Q
    |||||||||| ||||||||||||||||||||||    
T  1872 gaatcaaaatcattgttagagaaaaacttgcct 1904  T

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Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 404 - 544
Target Start/End: Original strand, 6245606 - 6245746
Alignment:
Q  404 ggatgcctttcaaaatttggacacttatagatgatcacaactggtgaagatccacacgatatactccctttgcacacaatcttcaattgtggtaaaaatc 503  Q
    |||| |||||| ||||||||||| ||| |||||  |||   ||||||||||||||| |||||||||||||||||||| || ||||||| ||||||| |      
T  6245606 ggatacctttctaaatttggacagttaaagatgtccacttttggtgaagatccacatgatatactccctttgcacacgattttcaattctggtaaataat 6245705  T
Q  504 tcaagtataatcgggccaacttaggaagtgaaatgatggat 544  Q
     ||||  ||||| || |||||||||||||||||||||||||    
T  6245706 acaaggttaatctggtcaacttaggaagtgaaatgatggat 6245746  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 448 - 544
Target Start/End: Original strand, 6175668 - 6175764
Alignment:
Q  448 tgaagatccacacgatatactccctttgcacacaatcttcaattgtggtaaaaatctcaagtataatcgggccaacttaggaagtgaaatgatggat 544  Q
    ||||||||||||   |||| |||||| ||||||  | |||| ||||||||||  ||||||| |||||| || |||||||||||||||||||||||||    
T  6175668 tgaagatccacaaagtataatcccttcgcacacggttttcagttgtggtaaacttctcaagcataatctggtcaacttaggaagtgaaatgatggat 6175764  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 448 - 545
Target Start/End: Original strand, 6103975 - 6104072
Alignment:
Q  448 tgaagatccacacgatatactccctttgcacacaatcttcaattgtggtaaaaatctcaagtataatcgggccaacttaggaagtgaaatgatggatc 545  Q
    |||||||||||||  ||| || ||||||||||| |||||||||||||||||| |   ||||  ||||   | ||||||||||||||||||||||||||    
T  6103975 tgaagatccacaccgtatgctgcctttgcacacgatcttcaattgtggtaaatactccaaggttaattcagtcaacttaggaagtgaaatgatggatc 6104072  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 456 - 499
Target Start/End: Original strand, 6092567 - 6092610
Alignment:
Q  456 cacacgatatactccctttgcacacaatcttcaattgtggtaaa 499  Q
    |||| ||||||||||||||||| | |||||||||||||||||||    
T  6092567 cacaagatatactccctttgcagaaaatcttcaattgtggtaaa 6092610  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 445 - 499
Target Start/End: Original strand, 6087264 - 6087318
Alignment:
Q  445 tggtgaagatccacacgatatactccctttgcacacaatcttcaattgtggtaaa 499  Q
    |||||||||||||||   |||||| |||||| | |||||||||||||||||||||    
T  6087264 tggtgaagatccacagcgtatactgcctttgtaaacaatcttcaattgtggtaaa 6087318  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 465 - 499
Target Start/End: Original strand, 6092654 - 6092688
Alignment:
Q  465 tactccctttgcacacaatcttcaattgtggtaaa 499  Q
    |||||||||||||||||||||||| ||||||||||    
T  6092654 tactccctttgcacacaatcttcagttgtggtaaa 6092688  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 463 - 499
Target Start/End: Original strand, 6232821 - 6232857
Alignment:
Q  463 tatactccctttgcacacaatcttcaattgtggtaaa 499  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  6232821 tatactgcctttgcacacgatcttcaattgtggtaaa 6232857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0961 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0961
Description:

Target: scaffold0961; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 12 - 44
Target Start/End: Complemental strand, 1745 - 1713
Alignment:
Q  12 gaatcaaaattattgttagagaaaaacttgcct 44  Q
    |||||||||| ||||||||||||||||||||||    
T  1745 gaatcaaaatcattgttagagaaaaacttgcct 1713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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