View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0834_low_41 (Length: 258)
Name: NF0834_low_41
Description: NF0834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0834_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 30 - 188
Target Start/End: Original strand, 51150462 - 51150620
Alignment:
| Q |
30 |
gctttaacatcagagttacaaaacaaaattgctaaaatcaacgaagagggtccttatttgggtttaatcataccaaattcttttgaacttaaccctcttc |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51150462 |
gctttaacatcagagttacaaaacaaaattgctaaaatcaacgaagagggtccttatttgggtttaatcataccaaattcttttgaacttaaccctcttc |
51150561 |
T |
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| Q |
130 |
ttcaaaatccaggctatactgctagtgacaacatcatagattttgcaggtaagtgcatg |
188 |
Q |
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|||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||| |
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| T |
51150562 |
ttcaaaatccaggctatactcctagtgatagcatcatagattttgcaggtaagtgcatg |
51150620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 30 - 188
Target Start/End: Original strand, 51162763 - 51162921
Alignment:
| Q |
30 |
gctttaacatcagagttacaaaacaaaattgctaaaatcaacgaagagggtccttatttgggtttaatcataccaaattcttttgaacttaaccctcttc |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51162763 |
gctttaacatcagagttacaaaacaaaattgctaaaatcaacgaagagggtccttatttgggtttaatcataccaaattcttttgaacttaaccctcttc |
51162862 |
T |
|
| Q |
130 |
ttcaaaatccaggctatactgctagtgacaacatcatagattttgcaggtaagtgcatg |
188 |
Q |
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|||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||| |
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| T |
51162863 |
ttcaaaatccaggctatactcctagtgatagcatcatagattttgcaggtaagtgcatg |
51162921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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