View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0834_low_44 (Length: 255)
Name: NF0834_low_44
Description: NF0834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0834_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 44574703 - 44574483
Alignment:
| Q |
1 |
tttagttttggtctagttttatatgatttgcatctgaatcctttctatctggattagcttagagattagatttaaatttggttacatttggccttcatta |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44574703 |
tttagttttggtctagttgtatatgatttgcatctgaatcctttctatctggattagcttagagattagatttaaatttggttacatttggccttcatta |
44574604 |
T |
|
| Q |
101 |
ttataatttggtcaatcagttaaattcattttctttcaagaatacaaactcaaattttagtttttcctatacattagcccccacttttcacaatacatgt |
200 |
Q |
| |
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||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44574603 |
ttataatttggtcgatctgttaaattcattttctttcaagaatacaaactcaaattttagtttttcctatacattagcccccacttttcacaatacatgt |
44574504 |
T |
|
| Q |
201 |
acattgtgtcaatgatccaat |
221 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
44574503 |
acattgtgtcaatgatccaat |
44574483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 221
Target Start/End: Original strand, 25383067 - 25383102
Alignment:
| Q |
186 |
tttcacaatacatgtacattgtgtcaatgatccaat |
221 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |
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| T |
25383067 |
tttcataatacatgtacattgtgtcaatgatccaat |
25383102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 221
Target Start/End: Complemental strand, 10123339 - 10123310
Alignment:
| Q |
192 |
aatacatgtacattgtgtcaatgatccaat |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
10123339 |
aatacatgtacattgtgtcaatgatccaat |
10123310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 221
Target Start/End: Complemental strand, 28245095 - 28245066
Alignment:
| Q |
192 |
aatacatgtacattgtgtcaatgatccaat |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
28245095 |
aatacatgtacattgtgtcaatgatccaat |
28245066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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