View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0834_low_45 (Length: 254)
Name: NF0834_low_45
Description: NF0834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0834_low_45 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 28 - 254
Target Start/End: Original strand, 48320452 - 48320678
Alignment:
| Q |
28 |
agacattacttggagtcatcaacccagacaagggaacaagtattcttcaaaactgtaagtgtacttgttgcatctctctgatttatctttctctgttttc |
127 |
Q |
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| T |
48320452 |
agacattacttggagtcatcaacccagacaagggaacaagtattcttcaaaactgtaagtgtacttgttgcatctctctgatttatctttctctgttttc |
48320551 |
T |
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| Q |
128 |
cttctgagttaaaacaagtttgagtttacttttgttgcattgtatgatgtctatgttcttttggttgcctcaattagtaattactttgattaaattgttt |
227 |
Q |
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| T |
48320552 |
cttctgagttaaaacaagtttgagtttacttttgttgcattgtatgatgtctatgttcttttggttgcctcaattagtaattactttgattaaattgttt |
48320651 |
T |
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| Q |
228 |
aaatagtacacaggtaccgtttctggt |
254 |
Q |
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||||||||||||||||||||||||||| |
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| T |
48320652 |
aaatagtacacaggtaccgtttctggt |
48320678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 79
Target Start/End: Original strand, 47380715 - 47380750
Alignment:
| Q |
44 |
catcaacccagacaagggaacaagtattcttcaaaa |
79 |
Q |
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|||||||||||||||||||||||| ||||||||||| |
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| T |
47380715 |
catcaacccagacaagggaacaagcattcttcaaaa |
47380750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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